RNA id: TU380401


Basic Information

Item Value
RNA id TU380401
length 221
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G321226
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16056210 ~ 16056430 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTGACGTAAGTGCGCACTCAGTGAACACTGTGAACTCTGAAGCTTTGAACTATGCGAGTCTCAACTGTGCtgcttgtgtgcatgtttgctGAGAAGAAAGAATGACAATACTGATGTGTGAGATGCCATCTATATCTATCTTGTCTGGCAGTCTTGTTTGATTAGTGCTGTCTTCTAAGTACTCACTGCTTTGAAAAGCTGCACTGGGAGACATATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380398 lncRNA upstream 3944 16051784 ~ 16052266 (+) True G321223
TU380396 lncRNA upstream 5361 16049720 ~ 16050849 (+) True G321221
TU380395 lncRNA upstream 6902 16049094 ~ 16049308 (+) True G321220
TU380392 lncRNA upstream 9728 16046146 ~ 16046482 (+) True G321217
TU380389 lncRNA upstream 12472 16041794 ~ 16043738 (+) True G321214
TU380410 lncRNA downstream 11597 16068027 ~ 16068547 (+) True G321235
TU380411 lncRNA downstream 12574 16069004 ~ 16069216 (+) True G321236
TU380414 lncRNA downstream 33176 16089606 ~ 16090399 (+) True G321239
TU380416 lncRNA downstream 35166 16091596 ~ 16093824 (+) True G321241
TU380421 lncRNA downstream 39473 16095903 ~ 16096229 (+) True G321245
XM_026925672.2 mRNA upstream 14472 16039835 ~ 16041738 (+) True uba52
XM_034314914.1 mRNA upstream 18030 16028370 ~ 16038180 (+) True cers4b
XM_026925779.2 mRNA upstream 56770 15992220 ~ 15999440 (+) True rab11bb
XM_034314824.1 mRNA upstream 71625 15938895 ~ 15984585 (+) False pip5k1cb
XM_026925364.2 mRNA downstream 44103 16100533 ~ 16102442 (+) True jund
XM_026925606.2 mRNA downstream 55605 16112035 ~ 16120033 (+) False si:ch211-178n15.1
XM_034314867.1 mRNA downstream 55606 16112036 ~ 16117345 (+) True si:ch211-178n15.1
XM_026925885.2 mRNA downstream 106024 16162454 ~ 16167346 (+) True cplx4c
XM_026925384.2 mRNA downstream 118140 16174570 ~ 16180499 (+) True rx2
TU380359 other upstream 119442 15929952 ~ 15936768 (+) False gpx4b
TU380255 other upstream 185215 15869016 ~ 15870995 (+) True G321088
TU379509 other upstream 1227439 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 2160545 13837433 ~ 13895665 (+) False LOC113533270
XR_004580319.1 other downstream 44103 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 55606 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 74905 16131335 ~ 16132364 (+) True G321257
trnag-gcc_18 other downstream 127642 16184072 ~ 16184142 (+) True trnag-gcc_18
trnag-gcc_19 other downstream 129067 16185497 ~ 16185567 (+) True trnag-gcc_19

Expression Profile