RNA id: TU380410


Basic Information

Item Value
RNA id TU380410
length 521
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G321235
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16068027 ~ 16068547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacacacactgaatacacaGTTCACTCACCCCATTTCGTTGTCAATGCAAAAAGACAGGAATTCTCATTGCCCCCTGTGGAGTGAGGGAAGTGCAGAAACCGCAGAGAGTCCTGTATCCCTCGAGTCGCGTGCGGATGCGTCCCGGAATTACCGGGAGAGGACCGGAAAGCCTGCTCTCTCAGCTCCACACGAGACTTTAAACTAAAACCGTTAAAACACGGGACAGAGGGGTACTGAACatcctgtgtggagtttccctTCCTGTTTccccttccttctttctttctttctttgcctgCACTTCGGTAACCTTGCGGACAGCCGCAAAACTCTCGCCGCTTTCTGCTCAGCGTGCACGCGCCTCGCTGTCCAACTCCTCGCTCGCGACGCCGCGCCGCGCCACTTGGCAACTCGTTAAAAGGGGCCGTCGATCTGTCACGCGCTTCCGTCGCCGCCGCTTCCGTTTACAGCCGAGCGCGAGCCGCCGCGGCACAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380401 lncRNA upstream 11597 16056210 ~ 16056430 (+) True G321226
TU380398 lncRNA upstream 15761 16051784 ~ 16052266 (+) True G321223
TU380396 lncRNA upstream 17178 16049720 ~ 16050849 (+) True G321221
TU380395 lncRNA upstream 18719 16049094 ~ 16049308 (+) True G321220
TU380392 lncRNA upstream 21545 16046146 ~ 16046482 (+) True G321217
TU380411 lncRNA downstream 457 16069004 ~ 16069216 (+) True G321236
TU380414 lncRNA downstream 21059 16089606 ~ 16090399 (+) True G321239
TU380416 lncRNA downstream 23049 16091596 ~ 16093824 (+) True G321241
TU380421 lncRNA downstream 27356 16095903 ~ 16096229 (+) True G321245
TU380422 lncRNA downstream 27706 16096253 ~ 16097391 (+) True G321246
XM_026925672.2 mRNA upstream 26289 16039835 ~ 16041738 (+) True uba52
XM_034314914.1 mRNA upstream 29847 16028370 ~ 16038180 (+) True cers4b
XM_026925779.2 mRNA upstream 68587 15992220 ~ 15999440 (+) True rab11bb
XM_034314824.1 mRNA upstream 83442 15938895 ~ 15984585 (+) False pip5k1cb
XM_026925364.2 mRNA downstream 31986 16100533 ~ 16102442 (+) True jund
XM_026925606.2 mRNA downstream 43488 16112035 ~ 16120033 (+) False si:ch211-178n15.1
XM_034314867.1 mRNA downstream 43489 16112036 ~ 16117345 (+) True si:ch211-178n15.1
XM_026925885.2 mRNA downstream 93907 16162454 ~ 16167346 (+) True cplx4c
XM_026925384.2 mRNA downstream 106023 16174570 ~ 16180499 (+) True rx2
TU380359 other upstream 131259 15929952 ~ 15936768 (+) False gpx4b
TU380255 other upstream 197032 15869016 ~ 15870995 (+) True G321088
TU379509 other upstream 1239256 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 2172362 13837433 ~ 13895665 (+) False LOC113533270
XR_004580319.1 other downstream 31986 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 43489 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 62788 16131335 ~ 16132364 (+) True G321257
trnag-gcc_18 other downstream 115525 16184072 ~ 16184142 (+) True trnag-gcc_18
trnag-gcc_19 other downstream 116950 16185497 ~ 16185567 (+) True trnag-gcc_19

Expression Profile