RNA id: TU380411


Basic Information

Item Value
RNA id TU380411
length 213
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G321236
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16069004 ~ 16069216 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgagcagcagttctgctggcggaaacaccttgctgctgagaggtcagaggaaaatggccagactggttcaagctcaCAAGAAGGCTACACTAACTCACTAATTACTCTTTAAAaccgtagtgagcagaaaagcatctcagaacacatcaAACCTGGAGGCAGATGGACCACAAcatcagaagaccacatcaggttcctctactctcagccaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380410 lncRNA upstream 457 16068027 ~ 16068547 (+) True G321235
TU380401 lncRNA upstream 12574 16056210 ~ 16056430 (+) True G321226
TU380398 lncRNA upstream 16738 16051784 ~ 16052266 (+) True G321223
TU380396 lncRNA upstream 18155 16049720 ~ 16050849 (+) True G321221
TU380395 lncRNA upstream 19696 16049094 ~ 16049308 (+) True G321220
TU380414 lncRNA downstream 20390 16089606 ~ 16090399 (+) True G321239
TU380416 lncRNA downstream 22380 16091596 ~ 16093824 (+) True G321241
TU380421 lncRNA downstream 26687 16095903 ~ 16096229 (+) True G321245
TU380422 lncRNA downstream 27037 16096253 ~ 16097391 (+) True G321246
TU380423 lncRNA downstream 29399 16098615 ~ 16099001 (+) True G321247
XM_026925672.2 mRNA upstream 27266 16039835 ~ 16041738 (+) True uba52
XM_034314914.1 mRNA upstream 30824 16028370 ~ 16038180 (+) True cers4b
XM_026925779.2 mRNA upstream 69564 15992220 ~ 15999440 (+) True rab11bb
XM_034314824.1 mRNA upstream 84419 15938895 ~ 15984585 (+) False pip5k1cb
XM_026925364.2 mRNA downstream 31317 16100533 ~ 16102442 (+) True jund
XM_026925606.2 mRNA downstream 42819 16112035 ~ 16120033 (+) False si:ch211-178n15.1
XM_034314867.1 mRNA downstream 42820 16112036 ~ 16117345 (+) True si:ch211-178n15.1
XM_026925885.2 mRNA downstream 93238 16162454 ~ 16167346 (+) True cplx4c
XM_026925384.2 mRNA downstream 105354 16174570 ~ 16180499 (+) True rx2
TU380359 other upstream 132236 15929952 ~ 15936768 (+) False gpx4b
TU380255 other upstream 198009 15869016 ~ 15870995 (+) True G321088
TU379509 other upstream 1240233 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 2173339 13837433 ~ 13895665 (+) False LOC113533270
XR_004580319.1 other downstream 31317 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 42820 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 62119 16131335 ~ 16132364 (+) True G321257
trnag-gcc_18 other downstream 114856 16184072 ~ 16184142 (+) True trnag-gcc_18
trnag-gcc_19 other downstream 116281 16185497 ~ 16185567 (+) True trnag-gcc_19

Expression Profile