Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU380540 |
| length | 371 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 1 |
| gene id | G321349 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 16098868 ~ 16099238 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU380538 | lncRNA | downstream | 49225 | 16049442 ~ 16049643 (-) | True | G321347 |
| TU380518 | lncRNA | downstream | 57127 | 16040881 ~ 16041741 (-) | True | G321330 |
| XR_004576914.1 | lncRNA | downstream | 271524 | 15811353 ~ 15827344 (-) | True | LOC117595737 |
| XR_003403425.2 | lncRNA | downstream | 385696 | 15687082 ~ 15713172 (-) | False | LOC113533563 |
| TU380546 | lncRNA | upstream | 88738 | 16187976 ~ 16190570 (-) | False | G321354 |
| TU380548 | lncRNA | upstream | 88738 | 16187976 ~ 16223314 (-) | True | G321354 |
| TU380547 | lncRNA | upstream | 93114 | 16192352 ~ 16223314 (-) | False | G321354 |
| TU380672 | lncRNA | upstream | 275272 | 16374510 ~ 16375343 (-) | True | G321465 |
| TU380675 | lncRNA | upstream | 294970 | 16394208 ~ 16456123 (-) | True | G321468 |
| XM_026925366.2 | mRNA | downstream | 4014 | 16090524 ~ 16094854 (-) | True | pgpep1 |
| XM_026925268.2 | mRNA | downstream | 10350 | 16071106 ~ 16088518 (-) | True | upf1 |
| XM_026925271.2 | mRNA | downstream | 10560 | 16071106 ~ 16088308 (-) | False | upf1 |
| XM_026925564.2 | mRNA | downstream | 30307 | 16041828 ~ 16068561 (-) | False | LOC113533416 |
| XM_026925563.2 | mRNA | downstream | 30307 | 16041828 ~ 16068561 (-) | True | LOC113533416 |
| XM_026925155.2 | mRNA | upstream | 29463 | 16128701 ~ 16131801 (-) | True | LOC113533206 |
| XM_034314864.1 | mRNA | upstream | 32331 | 16131569 ~ 16132462 (-) | True | LOC117599986 |
| XM_026925765.2 | mRNA | upstream | 41526 | 16140764 ~ 16143363 (-) | True | nmrk2 |
| XM_026925766.1 | mRNA | upstream | 41526 | 16140764 ~ 16143092 (-) | False | nmrk2 |
| XM_034314554.1 | mRNA | upstream | 48625 | 16147863 ~ 16160217 (-) | False | atcayb |
| TU380217 | other | downstream | 374512 | 15687258 ~ 15724356 (-) | False | LOC113533563 |
| TU380215 | other | downstream | 381373 | 15687258 ~ 15717495 (-) | False | LOC113533563 |
| TU379938 | other | downstream | 869612 | 15227472 ~ 15229256 (-) | False | LOC113533479 |
| TU379789 | other | downstream | 1353381 | 14731912 ~ 14745487 (-) | False | theg |
| trnaw-cca_17 | other | downstream | 4550429 | 11548368 ~ 11548439 (-) | True | trnaw-cca_17 |
| TU380669 | other | upstream | 258336 | 16357574 ~ 16367004 (-) | True | G321462 |
| XR_003403441.1 | other | upstream | 520395 | 16619633 ~ 16619734 (-) | True | LOC113533663 |
| trnal-uaa_3 | other | upstream | 874450 | 16973688 ~ 16973770 (-) | False | trnal-uaa_3 |
| trnal-uaa_4 | other | upstream | 981783 | 17081021 ~ 17081103 (-) | True | trnal-uaa_4 |
| TU381420 | other | upstream | 1400827 | 17500065 ~ 17500832 (-) | True | G322080 |
