RNA id: TU380634


Basic Information

Item Value
RNA id TU380634
length 267
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G321429
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16386257 ~ 16386523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgaaaatgtacactatatggccaaaagtctgacCCTGAcacatatgtgggccttccccaaattttgccacaaagttggagacacatgattgtctagaatgcctttgtatgctgtagcattacaatttcccttcactggagctaagaggcccaaacctgttccagcatgacaatgcccctgtgcacaaagcgagctccatgaagacatggtttgccaaagctggagtggaagaactcgggtgtcctgcacaaagccctgacctcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580325.1 lncRNA upstream 199254 16185620 ~ 16187003 (+) True LOC117599979
TU380437 lncRNA upstream 248653 16135324 ~ 16137604 (+) True G321258
TU380433 lncRNA upstream 255252 16130730 ~ 16131005 (+) True G321256
TU380432 lncRNA upstream 255573 16130422 ~ 16130684 (+) True G321255
TU380431 lncRNA upstream 255988 16129949 ~ 16130269 (+) True G321254
TU380639 lncRNA downstream 49676 16436199 ~ 16446124 (+) True G321434
TU380640 lncRNA downstream 69920 16456443 ~ 16457168 (+) True G321435
TU380660 lncRNA downstream 207674 16594197 ~ 16600593 (+) True G321454
TU380777 lncRNA downstream 279907 16666430 ~ 16703816 (+) True G321563
TU380811 lncRNA downstream 356371 16742894 ~ 16744115 (+) False LOC117599972
XM_026925685.2 mRNA upstream 1036 16376170 ~ 16385221 (+) True rab8a
XM_026925682.2 mRNA upstream 10905 16357577 ~ 16375352 (+) True tpm4b
XM_026925684.2 mRNA upstream 10905 16363334 ~ 16375352 (+) False tpm4b
XM_026925681.2 mRNA upstream 13160 16357580 ~ 16373097 (+) False tpm4b
XM_026925683.2 mRNA upstream 13160 16363339 ~ 16373097 (+) False tpm4b
XM_026925599.2 mRNA downstream 9305 16395828 ~ 16404212 (+) False sugp1
XM_026925598.2 mRNA downstream 9423 16395946 ~ 16404567 (+) True sugp1
XM_026925540.2 mRNA downstream 18265 16404788 ~ 16419408 (+) True mau2
XM_034314659.1 mRNA downstream 18798 16405321 ~ 16419408 (+) False mau2
XM_034314742.1 mRNA downstream 38854 16425377 ~ 16455986 (+) False LOC113533360
trnag-gcc_20 other upstream 199216 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 200690 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 202115 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 253893 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 266224 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 464922 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 1092311 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 1092311 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 1184126 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1840039 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile