RNA id: TU380777


Basic Information

Item Value
RNA id TU380777
length 489
lncRNA type sense_over
GC content 0.31
exon number 2
gene id G321563
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16666430 ~ 16703816 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttctgCTTAAGGCCTCATGAAATAATAATGCAGTTATACAATAGAAATATCATCATTAATTAGGCTTCAATACACTTTTCCAATCAAGTCCACTGATACAGCAAAAACTGcttattaaatgataaaatctatcctttatttatttttttaatttcagatttGACATCACTGTTAAATATGGCACTTCTCTTGTGGTGACTCTTTGTTGCCAAAcctaaatatttcataaacattgTGTTATCATGAAAATTCTTCATGTATCATGACATTGTAGATGAGAGTGCAACTGCAAAGAATAGAAAAATGcagaattttatttgtactcGTCACCTACACTGAAAAAGCTCAAGAGTTAACTTCTGACCAAATCAAATACCAGAGGATTAACTGTAACTCTGTAGGAGCTGTGTTAACAGTGTAGGATTTCAGTCCACAGGAGGTGATTTAACACTTGTTTAAgccctgcaaaaaaaaaaaaacaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380660 lncRNA upstream 65837 16594197 ~ 16600593 (+) True G321454
TU380640 lncRNA upstream 209262 16456443 ~ 16457168 (+) True G321435
TU380639 lncRNA upstream 220306 16436199 ~ 16446124 (+) True G321434
TU380634 lncRNA upstream 279907 16386257 ~ 16386523 (+) True G321429
XR_004580325.1 lncRNA upstream 479427 16185620 ~ 16187003 (+) True LOC117599979
TU380811 lncRNA downstream 39078 16742894 ~ 16744115 (+) False LOC117599972
TU380815 lncRNA downstream 41960 16745776 ~ 16755230 (+) True G321584
TU380812 lncRNA downstream 46344 16750160 ~ 16792097 (+) True G321582
TU380824 lncRNA downstream 56026 16759842 ~ 16772449 (+) True G321589
TU380826 lncRNA downstream 76049 16779865 ~ 16780202 (+) False LOC117599973
XM_026925003.2 mRNA upstream 36958 16620683 ~ 16629472 (+) True LOC113533121
XM_026925361.2 mRNA upstream 101409 16542334 ~ 16565021 (+) True LOC113533302
XM_026925526.2 mRNA upstream 198064 16460810 ~ 16468366 (+) True LOC113533391
XM_026925527.2 mRNA upstream 206050 16457677 ~ 16460380 (+) True ndufa13
XM_034314738.1 mRNA upstream 210444 16425634 ~ 16455986 (+) False LOC113533360
XM_026925339.2 mRNA downstream 10583 16714399 ~ 16717207 (+) True LOC113533288
XM_034297722.1 mRNA downstream 15000 16718816 ~ 16740603 (+) True LOC113533485
XM_034314722.1 mRNA downstream 38989 16742805 ~ 16748340 (+) False LOC117599972
XM_034314721.1 mRNA downstream 40094 16743910 ~ 16748340 (+) True LOC117599972
XM_034314724.1 mRNA downstream 40094 16743910 ~ 16748340 (+) False LOC117599972
trnag-gcc_20 other upstream 479389 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 480863 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 482288 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 534066 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 546397 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 147629 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 775018 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 775018 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 866833 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1522746 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile