RNA id: XM_034314727.1


Basic Information

Item Value
RNA id XM_034314727.1
length 2051
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC117599973
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16756631 ~ 16788968 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACAGTAGGGGGAGACGCTGTGCTGAACAGAGACTGTGTCTTTAACGGTGAGTCGCGTAGAGGAGGCCATTACAAGAGCGACTCCGTTCCTGAGAGCAGCACAGCCGTGTCTGtgtctttgtttattcaaaCAGTGGGGGCGAGACCGTGATCCACTGGTACCTGGTGGCACTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCATGCTaagaaagaaatgcaAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACACCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAAGaAAGCCAGTGGAGTTCTGTATTGCACACAACTGAAGGATGTGATTTTGGTGGCATTGAGAATTTAAGAAGCTGGCATGTTCAACATAttccattattttaataaaaacagcacgaaaGCCAGTGGAGTTCTGTATTGCACACAACTGCATTATTGTACTGCTCCCATGAGATGGGGGGTTACCATCAAGATTTATTGTCCAGTTAAGTGGTCGGGTCTGCTGGGAGCAGTGCTGGTTGTACAGTTTCACAGCAGCAGAGAGCATAGACCTGCGATACCGCTCCTTCACACACTTGGGGTGGAGCAGCCTGTCACTAAAGGAGCTGCCCAGTGCCCCCAGAGTCTCATGCATGGGGTGGGAGAAAAGCTCTACTGTGTACCATGTGTCTGCATGGCAAGttaataagacaaaaaagtcacaaagtTAAGGCAGGCTGTGGTTTTAGACGACATCGTAATTTTAGCAGGAAGAGGAACTGCTTGAGCTGCTACAGACACAGTAACAACTTCACACAGAAGCAGGACTCAATAAAAGCTCAAATATTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGCCATGGAGGCAGTTTAGTCTTAAAACTGGAGCATCTGTCACTATCCCATGTCATTATGACAGGAAATATATACAACATAAGAAATACTGGTGCTATGATGCTCATTCAGCATACAGTTTCTGCACAATTCAGGCATATGCCAATGACACACAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATAATCTCCAGACAGGAAATACTGGATCGTACTGGTGTGTTGTAGAGATAGGAGGAATATGGGACCCAGATGTTAAAGAAGACCTTAATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAACATCACAGTCCAGTGTTTCTACAGCGCTGCGTATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGATGGACGCTGCAACAAAGTGGAGAGAACTGCCACAtcccagaattcaacagtgcacATCAGTGATGATGGGAGAAGATCCTTCAGCGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATCTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAGCAGTGACTACAACCACTCACCATGTCAGTACTTACACATCTGTCTCGAAGCACAATTCAGCATCTGTGACTGCAGTTTCTAGCAGTGATCAAACCATaAAGCCAGAGGAGTTCTGTATAGCTCACAACTGAAGGATGTGATCTTGGTGGCATTGAGAACTTAAGAAGCTGGCACGCTCAacttactcatttatttttgtaaaaacagCACTGTCAGTcgtgtgttattctttacatatcaTTTAGAACACAGTATTTTATCTCAGAAATTACAACTTCTTTACAGTGTGCTTTTGAAAAAACAGGATAAGAATTCCAAATTTCCCTTTTCTCTTAGTCAATGGTGATTCTCTGCCATGTAGCAAAAGAGCATTCCTTTTCTAAACAATACATGAACACTGAGTGGTTGCCatgttattaattataataaagctTGTGTATTGCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380815 lncRNA upstream 7051 16745776 ~ 16755230 (+) True G321584
TU380811 lncRNA upstream 18166 16742894 ~ 16744115 (+) False LOC117599972
TU380777 lncRNA upstream 58465 16666430 ~ 16703816 (+) True G321563
TU380660 lncRNA upstream 161688 16594197 ~ 16600593 (+) True G321454
TU380640 lncRNA upstream 305113 16456443 ~ 16457168 (+) True G321435
TU380826 lncRNA downstream 6549 16779865 ~ 16780202 (+) False LOC117599973
TU380818 lncRNA downstream 15870 16789186 ~ 16789607 (+) True G321585
TU380813 lncRNA downstream 18812 16792128 ~ 16792438 (+) False LOC117595733
TU380827 lncRNA downstream 19398 16792714 ~ 16859578 (+) True G321591
TU380843 lncRNA downstream 119497 16892813 ~ 16893024 (+) True G321602
XM_034314730.1 mRNA upstream 1231 16756631 ~ 16761050 (+) False LOC117599973
XM_034314729.1 mRNA upstream 1232 16756631 ~ 16761049 (+) False LOC117599973
XM_034314731.1 mRNA upstream 1322 16756631 ~ 16760959 (+) False LOC117599973
XM_034314720.1 mRNA upstream 6781 16750183 ~ 16755500 (+) True LOC117599971
XM_034314722.1 mRNA upstream 13941 16742805 ~ 16748340 (+) False LOC117599972
XM_034297723.1 mRNA downstream 18086 16791402 ~ 16793698 (+) True LOC117595733
XM_034314732.1 mRNA downstream 25470 16798786 ~ 16805263 (+) True LOC117599974
XM_034314735.1 mRNA downstream 47419 16820735 ~ 16824608 (+) True LOC117599976
XM_034314733.1 mRNA downstream 56786 16830102 ~ 16845645 (+) True LOC117599975
XM_034314734.1 mRNA downstream 56786 16830102 ~ 16845641 (+) False LOC117599975
trnag-gcc_20 other upstream 575240 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 576714 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 578139 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 629917 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 642248 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 78129 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 705518 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 705518 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 797333 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1453246 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile