RNA id: XM_034314716.1


Basic Information

Item Value
RNA id XM_034314716.1
length 2597
RNA type mRNA
GC content 0.43
exon number 17
gene id LOC117599970
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16838768 ~ 16859682 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACACATGTGTGTCTATAATGGGGGCGAGACCGTGATCCACTGGTACCTGGTGGCACTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCATGCTaagaaagaaatgcaAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACACCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAAGaAAGCCAGTGGAGTTCTGTATTGCACACAACTGAAGGATGTGATTTTGGTGGCATTGAGAATTTAAGAAGCTGGCATGTTCAACATAttccattattttaataaaaacagcacgaaaGCCAGTGGAGTTCTGTATTGCACACAACTGCATTATTGTACTGCTCCCATGAGATGGGGGGTTACCATCAAGATTTATTGTCCAGGTAAGTGGTTGGGTCTGCTGGGAGCAGTGCTGGTTGTACAGTTTCACAGCAGCAGGGAGGAAGGACCTACGATACCGCTCCTTCACACACTTGGGGTGGAGCAGCCTGTCACTAAAGGAGCTGCCCAGTGCCCCCAGAGTCTCATGCATGGGGTGGGAGAAAAGCTCTACTGTGTACCATGTGTCTGCATGGCAAGttaataagacaaaaaagtcacaaagtTAAGGCAGGCTGTGGTTTTAGACGACATCGTAATTTTAGCAGGAAGAGGAACTGCTTGAGCTGCTACAGACACAGTAACAACTTCACACAGAAGCAGGACTCAATAAAAGCTCAAATATTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGCCATGGAGGCAGTTTAGTCTTAAAACTGGAGCATCTGTCACTATCCCATGTCGTTATGATAGGAAGTATATACAACATAAGAAATACTGGTGCTATGATGCTCATTCAGCATACAGTTTCTGCACAATTCAGGCATATGCCAATGACACACAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAGTCTCTTTACTGTGACAATGAATAATCTCCAGACAGGAAATACTGGATCGTACTGGTGTGTTGTAGAGATAGGAGGAATATGGGACCCAGATGTTAAAGAAGACCTTAATATCACAGTGAAATCAGATCCTGATCTGTCTGTGATGGAGAGCAGAGTGAGTGGTGAGGAAGGAGGCAGTGTCACAGTGAAGTGTCTCTACAGCTCTGCATATCAGAATACACAGAAGCAGTGGTGCAGATTCAAAGATGGACGCTGCAACACATTTAGGAAGACTGCCACatcccagaattcagcagtgaacATCAGTGATGATGGGAGAAGATCCTTCAGTGTGCAGATGAGTGGACTGAAGAAGAGTGATGCTGGCTGGTACTGGTGCAGTGCAGGAGATGTGCAGGTTCCTGTTCACATCAGTGTCCATGATCCACCTCCAGttGTGACTACAGCAGTGACTACAACAGTGACTACAACAGTGACTACAGCAGTGACTACAACCACTCACCATGTCAGTACTTACACATCTGTCTCGAAGCACGATTCAGCAGCATCTGTGACTGCAGTTTCTAGCAGTGATGAAACCATTGGGGGTGAGCCCGTGATCCACTGGTACCTGGTGGCCCTTATTTTACTACTGGTGATACTGGTCATCATCATCTGCATGCTaagaaagaaatgcaAGAATCAAATCAGGACCAGAGAGAGGAGCAATGACACCACTGTTCACACAcagCCCACTTTTCCAGCTGAAGACTCCattatatacagcactgtggctGTTTCTAAGCCAAAATCTTCAGCATCAAAAGATAATGAGCAGGACGTGACCTACAGCATTGTAAACATTGCTTCCAAGAATAAATCTGTGTCTCCAAATAATGTTGATGTTGAGAACATCTACAGCAACGTGGTGTGCCAGTAAGAGAtgtgtatataagtatataaAGATTGATGTCCTGTTTGGCTGGAAGGAAACTGTGGGTGGTGCCTCAGGGATCTCTACTGGGTCTCATGTTCATCCTCAGCATTATGAACAAACCCAATCAGGACAAGGACAACATACCTCACACTCATACCACTGACTTACATCATAGTCACATGACCCTCAGTCATTCAGAAAATACCAGTTTCCTTACTGTAGCTGCCACATGCTAACTGCTAAAGCTAACTCAATACAAGTCCTACTACACCAGCTATCATCATTTCCATCCACACGGCACACACCAGTCCAGCCCTTAAATACAGACATGCGTATGCAACATAACACACTGAGGAACTTACACAACTGGATGAAtataaatgtaagaaaaaaaaaaaacaattggtGATTGCAAATAAAAAGAGCAATTCCAGCATCTAGTATATCTATGTGTTCTTATATATTTCTCACATTTGCATATAAATACAAGGACAGACAAAGTGGTACATTTACATGTCTAATAAATATCTGAAGCATTCAGGGTTATTGTCGCTCATTAATGTTTtacttgtaaataataatttatcactttttattttgacaGTGTTGGTCTGTGTGTAttagcagtttttattttaactttagcattaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380813 lncRNA upstream 46330 16792128 ~ 16792438 (+) False LOC117595733
TU380812 lncRNA upstream 46671 16750160 ~ 16792097 (+) True G321582
TU380843 lncRNA downstream 33135 16892813 ~ 16893024 (+) True G321602
TU380963 lncRNA downstream 99067 16958745 ~ 16960734 (+) True G321704
TU381407 lncRNA downstream 621707 17481385 ~ 17482562 (+) False fuz
TU381408 lncRNA downstream 622235 17481913 ~ 17483644 (+) False fuz
XR_004580280.1 lncRNA downstream 665893 17525571 ~ 17537160 (+) True LOC117599934
XM_034314735.1 mRNA upstream 14160 16820735 ~ 16824608 (+) True LOC117599976
XM_034314732.1 mRNA upstream 33505 16798786 ~ 16805263 (+) True LOC117599974
XM_034297723.1 mRNA upstream 45070 16791402 ~ 16793698 (+) True LOC117595733
XM_034314727.1 mRNA upstream 65452 16762281 ~ 16773316 (+) True LOC117599973
XM_034297724.1 mRNA downstream 1145 16860823 ~ 16868946 (+) True LOC117595734
XM_034314719.1 mRNA downstream 14204 16873882 ~ 16882758 (+) True LOC113546333
XM_034314718.1 mRNA downstream 16995 16876673 ~ 16882758 (+) False LOC113546333
XM_026946365.2 mRNA downstream 71630 16931308 ~ 16937488 (+) False them6
XM_026946366.2 mRNA downstream 71634 16931312 ~ 16937488 (+) True them6
trnag-gcc_20 other upstream 651727 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 653201 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 654626 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 706404 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 718735 16112036 ~ 16120033 (+) False si:ch211-178n15.1
XR_004580277.1 other downstream 619156 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 619156 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 710971 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1366884 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 1366884 18226562 ~ 18227136 (+) False si:ch211-162e15.3

Expression Profile