RNA id: TU380843


Basic Information

Item Value
RNA id TU380843
length 212
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G321602
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16892813 ~ 16893024 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATGTAGGAAACTATGGCGTTTTCAAACAGTGACCTGTGTTCCATGAGCAATGCCCCGTGGTATCTCTTTGAGTCCGATGGAGCCGCACTCCACTGTCAGGCTGTAGCACCGGCAGCCAGAGGGACATCCGATGCAGGGCATGGGTAATAGGACCAGAACCACCACCAGAAGCGAGAGACAATGGAGGAGGAACGCCATCTCAGAAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380827 lncRNA upstream 33235 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 100375 16792128 ~ 16792438 (+) False LOC117595733
TU380812 lncRNA upstream 100716 16750160 ~ 16792097 (+) True G321582
TU380963 lncRNA downstream 65721 16958745 ~ 16960734 (+) True G321704
TU381407 lncRNA downstream 588361 17481385 ~ 17482562 (+) False fuz
TU381408 lncRNA downstream 588889 17481913 ~ 17483644 (+) False fuz
XR_004580280.1 lncRNA downstream 632547 17525571 ~ 17537160 (+) True LOC117599934
TU381461 lncRNA downstream 696048 17589072 ~ 17666213 (+) False npc1
XM_034314719.1 mRNA upstream 10055 16873882 ~ 16882758 (+) True LOC113546333
XM_034314718.1 mRNA upstream 10055 16876673 ~ 16882758 (+) False LOC113546333
XM_034297724.1 mRNA upstream 23867 16860823 ~ 16868946 (+) True LOC117595734
XM_034314717.1 mRNA upstream 33131 16851485 ~ 16859682 (+) False LOC117599970
XM_034314713.1 mRNA upstream 33135 16838768 ~ 16859678 (+) True LOC117599970
XM_026946365.2 mRNA downstream 38284 16931308 ~ 16937488 (+) False them6
XM_026946366.2 mRNA downstream 38288 16931312 ~ 16937488 (+) True them6
XM_026946367.2 mRNA downstream 42781 16935805 ~ 16938674 (+) True si:ch73-52e5.2
XM_034314648.1 mRNA downstream 48818 16941842 ~ 16947346 (+) True ftr67
XM_034314649.1 mRNA downstream 59953 16952977 ~ 16956560 (+) True LOC117599965
TU380835 other upstream 40389 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 705772 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 707246 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 708671 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 760449 16131335 ~ 16132364 (+) True G321257
XR_004580277.1 other downstream 585810 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 585810 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 677625 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1333538 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 1333538 18226562 ~ 18227136 (+) False si:ch211-162e15.3

Expression Profile