RNA id: TU381408


Basic Information

Item Value
RNA id TU381408
length 1732
lncRNA type sense_over
GC content 0.36
exon number 1
gene id fuz
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17478834 ~ 17483677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAAACagaatgtgattaaaaacacaGGCAGGGTGAAAATTAACAATATTGCTGCACTAATTAGTCAAATCATGAAAAGGCAGAATAtcactgtaacttttttttaaagaatcattTCACCTGTAATAGTCCCAAATTACTTCCTATTCATTACaaatgctcactacatagggtctAACATACAAATGGAAGAATGACTGTTGCTTAATTACTTATATATAATTTCACTTTTAGCagccatgatttaaaaatatcgAACATAAAGTTCATCattaatgcatttctttttcaaGTCCTTTTTCTACAATACCACTAGGCTCATTTCCCAGAGCTACATTAGATGATGTAGGATCTAATGAACAATATGgatattttttccctttaaatattatgaaattgTTTATAGCACTTGAACAGTGAAATTCTGACATCTGTAAAGGaattatgaaataataacaATGCAAGCAAATGCAGAACTGAGCTGTGTAGCCGAGAATGTAATCAGCAGTATTTATTAGTATCACTAATCTAAGATGATTTGTAGCATTTTATCGTTTTTAGCTTTAGTGTTGTTATCCAGCTAGCCCAATAGTCTGCCTCTTTAAACTCAGTGCACACACCAACAGTGTGATAAACAGCGATCAGTCTAGAAATATTCTTATTTTTGctaaattatgaattattatacattttcctCTTGCTCCTGTCAAAAGTTTGATGCAGTGATCTAATTGAATTAAGTGGAAAAGACACTTTAGCAGGAGGCAGCTTTAGTAGGAAGCAATCATGCAGGAAGTCTATAAAATGCGAATGACTTTGATAAATAAGTGAAATGTTCCCGTGTCTCTTGTTGTGATGTGGGCAGCACGGTGGCCTCCCATCCAGCGTGGTTCTcccagcgttcccgggataggctctggatccaccggatcctgaccaggataaagttctgacttactgaagataaatgaatgaatatacacAGTCATGTGAGGCTTCAtgcatacattatacatatatgaTACATTAACAAAGCGTTTCTGCCAGAAAAAAACtgctgcttactggatgttttttattttcagcacCATTCTGCATAAACGCTAGAGAcaactgtgtgtgaaaatcccaggagatttttctgaaattctcaaaccagcACTAAGTCTGACACCAACAACTGTGTCAGGGTCcaggtcactgagatcacatttttctcccattctgatgtttgatgtgaactttaactgaagttCTGGACCTATATCTGCGTGATTTtctgcattgcgctgctgccacatgattggctgatcgaATAATAGCACGAacatgcaggtgtacaggtgttcctaataaaggggccagtgagtgtatacataCGTCCATAGCACATGAACTATGCTGAATGTTCTGCTCCAGTCTACTGAATATCAGAagtgcagctgtgtgtgaataCTGTACAACAGAATTCAATACTACATTGTATTTTCATTAACAAGTTCTCATCAGTCTTACTGATTGAATTAACTCTTTAATTATATGAAAGAAATCTGCTGATAGAGTTTTAATACATGCCCTGGTTTTGTGTAGCTTTAAAACATCGACCAGGAAGAgtaagaaaagttaaaactgtgtttaaaaacatgtttatctgCTTTTCACGATTTTGTAATAGgtttgaaattcttttcttaaCAATACACAACTAATTATATCATTATCCAAAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380963 lncRNA upstream 521179 16958745 ~ 16960734 (+) True G321704
TU380843 lncRNA upstream 588889 16892813 ~ 16893024 (+) True G321602
TU380827 lncRNA upstream 622335 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 689475 16792128 ~ 16792438 (+) False LOC117595733
TU380818 lncRNA upstream 692306 16789186 ~ 16789607 (+) True G321585
XR_004580280.1 lncRNA downstream 41927 17525571 ~ 17537160 (+) True LOC117599934
TU381461 lncRNA downstream 105428 17589072 ~ 17666213 (+) False npc1
TU381471 lncRNA downstream 147570 17631214 ~ 17631512 (+) True G322127
TU381490 lncRNA downstream 238294 17721938 ~ 17786701 (+) True G322146
TU381586 lncRNA downstream 370904 17854548 ~ 17855258 (+) True G322233
XM_026946214.2 mRNA upstream 4092 17433918 ~ 17477821 (+) True hecw1b
XM_026946294.2 mRNA upstream 52188 17427910 ~ 17429725 (+) True ccr12a
XM_034314513.1 mRNA upstream 54649 17400391 ~ 17427264 (+) False si:ch211-106n13.3
XM_026946271.2 mRNA downstream 3743 17487387 ~ 17507387 (+) True gpt2l
XM_034314525.1 mRNA downstream 3743 17487387 ~ 17506759 (+) False gpt2l
XM_026946305.2 mRNA downstream 31053 17514697 ~ 17517367 (+) True c1ql3b
XM_026946216.2 mRNA downstream 87006 17570650 ~ 17636609 (+) True egfra
XM_026946215.2 mRNA downstream 156983 17640627 ~ 17665605 (+) True npc1
TU380835 other upstream 629489 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 1294872 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 1296346 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 1297771 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 1349549 16131335 ~ 16132364 (+) True G321257
XR_003404718.2 other downstream 87005 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 742918 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 742918 18226562 ~ 18227136 (+) False si:ch211-162e15.3
TU381842 other downstream 932173 18415817 ~ 18422631 (+) False pex5lb
XR_004580282.1 other downstream 1332365 18816009 ~ 18871360 (+) True slc44a5a

Expression Profile