RNA id: XR_004580278.1


Basic Information

Item Value
RNA id XR_004580278.1
length 2382
RNA type misc_RNA
GC content 0.50
exon number 3
gene id fuz
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17478834 ~ 17483677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATTTGTGTTAACAAGCAGGGAAAATGTATGAAACAGCTGCGGTTGCTGTGGCGACGCGGTGAGTCGTTTAAAAACAGGCATGAGACGACGTCTGTATCCTTGAGCAATGTTCGGCGTCCCTTCCCCACTCGGCATGCTTCATTCCCAGAGCGTCCAGCTCCTGTGTCTCACGGCGTCCAGCGGCGTTCCGCTCTTCTCCCGCGGCTCCGCCAAGCAGCTGCCCTTCTCCATCATTGGTTCCCTGAACGGCGTGCACATGTTCGGGATGGGTCACGATGCCGCTCTGTCCTGCTGCGAGACTGAACAAGGTGGACGTGTGCTCTGGAGAGTCTTCCACGACAGCCTGATGCTCATCGGCATCAGCAGCAACGCTAACGTGAGCGAGCTGCACTTGCGCCGTTTGCTGGAGAACGCCTGGAACTGCATGGTGCTCGTGCTGGGCCTGGACGAGCTGGCGAACGCACGGAACATAGAGCGGCTCAAGAGAGAGCTGCGCTCTTGTTATCGGTTAATCGACATGCTGCTTGAACGCGGCGTGGACGATCGTGATCGTGATCGTGATCAGGGCCTCATGGGAGGTCTGACGCACTGCACTGACTGTATACTGCTCCCTCAACCTGACCTCCTCCAGGAGACGCTGGAGTCCTTCACCCGGGCTGCAGAGAGCGAGTTTGGCTGTTTGCTTATCCGCGGTCGACTCGCAGTAGCTACGGAGAAATGGTGGCGTCTCGCTCCACAAGAGCTCGTCCTTCTTTCTGCCCTCGCAAATTTGCCCCCTGGGAAAACATCATGTGACTATCCAGTCTTTTTACCCCAAGGTAGCCCTAATGTCGCGCTCAGGCTGCTGTGCTTCCAGCTGCTCCCTGGTGCCATAGCTTGTGTCCTGTGTGGTCCAAGACCGTCTCTGTATCAGGTCGAGAATGAGCAGGTCTGCAGGTTTTGGTCTCCTGTGGTGGAGAACCTGCGATCCTGCTCGGACCAAGCCGAACGCTCGGCTCTGTCTCCTTCCGTTAGCCTCCGCAGGGACGTCCTAGCTCTTCTCTTAATAAACCGCGAGTCGCGTAGATCAGTGGCATCTCTCGGCCACGCCTGCTCGAAAGCCACGCCTCTTCTCTCACCGGCTCGGCGCTGGGAGCTTCTGCGCCTCTTTTACACGTTTGCAGTGACTCGCTATTTCACCTCGGAGGAGTCTCCGAGCTCAGAGTGTCCTCCTGCAGAGCTCCATGAGGAGTTTTCCGCAGGGTTCACTCACCTGCCCGTGCACTGCTACCTCGTGACTGATGAATGTAAATGCTACGCCGTGCAGACGCCTCAGCACCAGCTCTTCCTCCTCACTGACCTCTCCGTGCCCACATTCGCGTTGCGCTCcgccaccacacacactctggatGCCATCACCACGGCGACTGGCTTTTAGGGCGCCAGACAGTGTAGGAGTAATCACTTGGATTATATGGTGCTATTTTGGAGGTTTTGGCAAACACGGTGGCCTCCCATCCAGCGTGGTTCTcccagcgttcccgggataggctctggatccaccggatcctgaccaggataaagttctgacttactgaagataaatgaatgaatatacacAGTCATGTGAGGCTTCAtgcatacattatacatatatgaTACATTAACAAAGCGTTTCTGCCAGAAAAAAACtgctgcttactggatgttttttattttcagcacCATTCTGCATAAACGCTAGAGAcaactgtgtgtgaaaatcccaggagatttttctgaaattctcaaaccagcACTAAGTCTGACACCAACAACTGTGTCAGGGTCcaggtcactgagatcacatttttctcccattctgatgtttgatgtgaactttaactgaagttCTGGACCTATATCTGCGTGATTTtctgcattgcgctgctgccacatgattggctgatcgaATAATAGCACGAacatgcaggtgtacaggtgttcctaataaaggggccagtgagtgtatacataCGTCCATAGCACATGAACTATGCTGAATGTTCTGCTCCAGTCTACTGAATATCAGAagtgcagctgtgtgtgaataCTGTACAACAGAATTCAATACTACATTGTATTTTCATTAACAAGTTCTCATCAGTCTTACTGATTGAATTAACTCTTTAATTATATGAAAGAAATCTGCTGATAGAGTTTTAATACATGCCCTGGTTTTGTGTAGCTTTAAAACATCGACCAGGAAGAgtaagaaaagttaaaactgtgtttaaaaacatgtttatctgCTTTTCACGATTTTGTAATAGgtttgaaattcttttcttaaCAATACACAACTAATTATATCATTATCCAAAGAAGAGTCGTtcctattttgtattttattgcagTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380963 lncRNA upstream 518100 16958745 ~ 16960734 (+) True G321704
TU380843 lncRNA upstream 585810 16892813 ~ 16893024 (+) True G321602
TU380827 lncRNA upstream 619256 16792714 ~ 16859578 (+) True G321591
TU380813 lncRNA upstream 686396 16792128 ~ 16792438 (+) False LOC117595733
TU380818 lncRNA upstream 689227 16789186 ~ 16789607 (+) True G321585
XR_004580280.1 lncRNA downstream 41894 17525571 ~ 17537160 (+) True LOC117599934
TU381461 lncRNA downstream 105395 17589072 ~ 17666213 (+) False npc1
TU381471 lncRNA downstream 147537 17631214 ~ 17631512 (+) True G322127
TU381490 lncRNA downstream 238261 17721938 ~ 17786701 (+) True G322146
TU381586 lncRNA downstream 370871 17854548 ~ 17855258 (+) True G322233
XM_026946214.2 mRNA upstream 1013 17433918 ~ 17477821 (+) True hecw1b
XM_026946294.2 mRNA upstream 49109 17427910 ~ 17429725 (+) True ccr12a
XM_034314513.1 mRNA upstream 51570 17400391 ~ 17427264 (+) False si:ch211-106n13.3
XM_026946271.2 mRNA downstream 3710 17487387 ~ 17507387 (+) True gpt2l
XM_034314525.1 mRNA downstream 3710 17487387 ~ 17506759 (+) False gpt2l
XM_026946305.2 mRNA downstream 31020 17514697 ~ 17517367 (+) True c1ql3b
XM_026946216.2 mRNA downstream 86973 17570650 ~ 17636609 (+) True egfra
XM_026946215.2 mRNA downstream 156950 17640627 ~ 17665605 (+) True npc1
TU380835 other upstream 626410 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 1291793 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 1293267 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 1294692 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 1346470 16131335 ~ 16132364 (+) True G321257
XR_003404718.2 other downstream 86972 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 742885 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 742885 18226562 ~ 18227136 (+) False si:ch211-162e15.3
TU381842 other downstream 932140 18415817 ~ 18422631 (+) False pex5lb
XR_004580282.1 other downstream 1332332 18816009 ~ 18871360 (+) True slc44a5a

Expression Profile