Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU381461 |
| length | 1086 |
| lncRNA type | read_through |
| GC content | 0.35 |
| exon number | 2 |
| gene id | npc1 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 17589072 ~ 17666213 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004580280.1 | lncRNA | upstream | 51912 | 17525571 ~ 17537160 (+) | True | LOC117599934 |
| TU381408 | lncRNA | upstream | 105428 | 17481913 ~ 17483644 (+) | False | fuz |
| TU381407 | lncRNA | upstream | 106510 | 17481385 ~ 17482562 (+) | False | fuz |
| TU380963 | lncRNA | upstream | 628338 | 16958745 ~ 16960734 (+) | True | G321704 |
| TU380843 | lncRNA | upstream | 696048 | 16892813 ~ 16893024 (+) | True | G321602 |
| TU381490 | lncRNA | downstream | 55725 | 17721938 ~ 17786701 (+) | True | G322146 |
| TU381586 | lncRNA | downstream | 188335 | 17854548 ~ 17855258 (+) | True | G322233 |
| TU381693 | lncRNA | downstream | 408116 | 18074329 ~ 18074748 (+) | True | G322324 |
| TU381739 | lncRNA | downstream | 532627 | 18198840 ~ 18199709 (+) | True | G322365 |
| TU381778 | lncRNA | downstream | 563182 | 18229395 ~ 18231463 (+) | True | G322398 |
| XM_026946305.2 | mRNA | upstream | 71705 | 17514697 ~ 17517367 (+) | True | c1ql3b |
| XM_026946271.2 | mRNA | upstream | 81685 | 17487387 ~ 17507387 (+) | True | gpt2l |
| XM_034314525.1 | mRNA | upstream | 82313 | 17487387 ~ 17506759 (+) | False | gpt2l |
| XM_026946285.2 | mRNA | upstream | 105395 | 17478834 ~ 17483677 (+) | True | fuz |
| XM_026946259.2 | mRNA | downstream | 176236 | 17842449 ~ 17853870 (+) | True | yme1l1b |
| XM_026946314.2 | mRNA | downstream | 194098 | 17860311 ~ 17872029 (+) | True | rab18b |
| XM_026946277.2 | mRNA | downstream | 299680 | 17965893 ~ 17979122 (+) | True | wacb |
| XM_026946278.2 | mRNA | downstream | 299975 | 17966188 ~ 17979122 (+) | False | wacb |
| XM_026946276.2 | mRNA | downstream | 299979 | 17966192 ~ 17979122 (+) | False | wacb |
| XR_004580277.1 | other | upstream | 105395 | 17478834 ~ 17483677 (+) | False | fuz |
| XR_004580278.1 | other | upstream | 105395 | 17478834 ~ 17483677 (+) | False | fuz |
| TU380835 | other | upstream | 736648 | 16851445 ~ 16852424 (+) | False | LOC117599970 |
| trnag-gcc_20 | other | upstream | 1402031 | 16186971 ~ 16187041 (+) | True | trnag-gcc_20 |
| trnag-gcc_19 | other | upstream | 1403505 | 16185497 ~ 16185567 (+) | True | trnag-gcc_19 |
| TU381774 | other | downstream | 560349 | 18226562 ~ 18227233 (+) | False | si:ch211-162e15.3 |
| TU381775 | other | downstream | 560349 | 18226562 ~ 18227136 (+) | False | si:ch211-162e15.3 |
| TU381842 | other | downstream | 749604 | 18415817 ~ 18422631 (+) | False | pex5lb |
| XR_004580282.1 | other | downstream | 1149796 | 18816009 ~ 18871360 (+) | True | slc44a5a |
| TU383181 | other | downstream | 2772489 | 20438702 ~ 20440561 (+) | True | G323534 |
