RNA id: XM_026946215.2


Basic Information

Item Value
RNA id XM_026946215.2
length 4607
RNA type mRNA
GC content 0.51
exon number 26
gene id npc1
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17589072 ~ 17666213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTGACCGGCGTTGGAatgttgcgcatgcgcagtgcagGTCGGACGAGCGCTTGCGTAGTGACAGATGATAACAAGAGCGAGCGGCGCACTGTTTCTCACAGCAGCCTGGTGTAGCGCAGGAGGGGAGAAAGAATGACTCTTTGCAAAACAAGCTACATTTTGGGGCTGTTAGGAATTATCATTTTACTCTCGGAGACGCGACAGGCCGAGGCGCAGCATTGTATCTGGTATGGAGAATGCGGCAACTCGACTCTCCTCCCAGATAAGAAGTACAACTGTAACTACACAGGACCTCCTAAACCCCTACCTAAAGACGGACAAGACCTCTTACTGGAACTTTGTCCAGGTTTGGTCTACGGTAACCAGAGCGTCTGCTGTGACACCCAGCAACTGCGTACACTGAAAGGCAACATCCAGATACCTTTACAATACCTGTCCAGGTGTCCAGCATGTTTCTTCAACTTCATGACCCTGTTCTGCGAGCTGACCTGCAGCCCCCGGCAGAGCGAGTTCCTCAACGCCACCCAGTTCTCAGTCAACCCCGTCGACAACAGCACCAACGTAGTCGAGCTCTCGTACTACATCAGCCAGGACTTCGCTAACGctatGTACAATGCGTGCAAGGACGTAGAAGCTCCGTCCAGCAATGTGAAGGCTCTTAGTTTGCTGTGTGGCCGAGACGCCAGTGCCTGCACCCCCACCAACTGGATCCAGTACATGTTTGACACCAACAACGGCCAGGTTCCCTTTGCCATCGATCCCGTGTTCTCAGGTAATCCGCCCTCTGGAATGACCTTCATGAATAACCACACGTTTGGCTGCACCGAGTCTCTGGACGACGGCTCAGCGCCGTGCTCGTGTCAGGACTGCAGTGCAGCTTGTGGGCCCTCGCCCGTCCCTCCACCCAGCCCTCTGCCATGGACCATTTTGGGCTACGATGCCATGTGCTTCATCATGTGGGTCTCGTACGCGGCCTTTCTTCTCGTCTTCTTCGGCATGCTGAGTTTAGCGTGGTGCTTCAGaAAAAGGGACATCACGTCGGAGTATGGCCCCATCCAAGACAGCAACGAGCCTCTTTCTCTGAACAAGGACCCTGCCAGATCATCCAgtGAAGTGACGTGTTGTGAGTCTCTAGGTGAGCGCTTTGAGAATTTCCTCCGTAATGTCTTCAGCTGCTGGGGTTCGTTCTGTGTGCGCTGTCCCCTGCTGGTGATCTTAGTGAGCATCGTGCTGGTGGTGATCTGCTGCATGGGTTTGAGGCACATGCGCATCACCACCGACCCGGTGGACCTGTGGTCGGCCCCTCACAGCCGCGCCAGGCAGGAGAAACAGTACTTCGACGAGCACTTCGGCCCGTTCTTCCGCACTGAGCAGCTCATCATCACCACACCATGGACCAACTGGTTCACGTTTGAGTCCACCACCGGGGGTGATATCCCCTTTGCGCCCATCCTGAACATATCTCTGCTCCATCAGATTCTAGATCTCCAGATTGCCATTGAGCAACTGGAGGCAGACTTTAATGGAGAGAAGGTTACCCTGAAGGATATCTGCATATCTCCTCTGGCTCCCTACAACAACAACTGCACCATTCTGAGCGTGCTCAATTACTTCCAGAACAGCCATGAAGTTTTGGATCACATCTGGCGTGATGAGTTTTATGTGTACTTTGATTATCACACGCACTTCATGTACTGTGTAAgTTCCCCGGTAGCCCTGGACGATACAGGGCATTTCCACGACCCCTGCATGGGCACTTTTGGTGGTCCTGTCTTCCCCTGGCTGGTCCTCGGAGGCTATGAAGGAACAGCGTACAACAATGCCACTGCTCTAGTGATCACCTTCCCTATCAATAACTCCCTCAACGTCACAGAAAAGCTGGGCAGAGCTCTCGCTTGGGAGAAAGAattcGTCAGCTTTTTGAAAAACTACAGCAACCCCGACCTCATCATCTCCTTCAACTCGGAGCGCAGCATCGAGGATGAGATCAATCGGGAAAgcaacagtgacatcaccaccGTACTGATCAGCTACGCCACCATGTTTGTCTACATCTCCCTGGCTCTGGGACACATCAGGAGCTTCCGTACCCTGCTGGTGGACTCGAAGATCTCTCTGGGTATAGCGGGCATCCTGATCGTCCTCAGCTCAGTCGCCTGCTCTCTGGGCATCTTCAGCTACGTCGGCATTCCCCTCACCCTCATCGTCATCGAGGTCATCCCCTTCCTTGTGCTGGCCGTGGGAGTGGACAACATCTTCATCATCGTGCAGACCTTCCAGAGAGATGAGCGGCTGGAGCATGAGGAGCTGCATCAACAGATAGGCCGTATCCTGGGAGACGTTGCCCCCAGCATGTTCCTGTCCTCCCTCTCAGAGACTGTCGCATTTTTCTTAGGAGCTCTGTCCCACATGCCGGCCGTGAGGACGTTCTCGCTCTTTGCTGGCTTGGCTGTCTTTATTGACTTCCTGTTGCAGATCAGCTGCTTTGTCTCCTTGCTTGGTCTGGATGTCAAGAGGCAAGAGaGAAATCGGCTGGACATCCTGTGCTGCATCAAGCTGCCTGACAGGCAGGAAGAGAATACCGAAGACGGTATCCTCTATCGCTTCTTTAAGAAAATCTACGCTCCCTTTATTCTGAAGGACTGCGTGCGCCCTCTGGTGGTTGCTGTGTTTGTGGGAATGCTCTCGTTCAGCATAGCAGTCATTGACAAAGTAGACATTGGACTCGACCAACAGCTGTCCATGCCTGATGACTCGTTTGTGTTGTACTACTTCGGGAACCTGACTAAATACCTGCATACGGGTCCTCCTGTCTACTTCGTGGTGAAGGACGGTCACGATTACCGCACCTCGGAGGGACAGAACCAAGTGTGTGGTGGCGTGGGCTGCAACAATAACTCGCTCATCCAGCAAATCTACACGGCATCACTCATGAGTGACTACTCTAAGATAAGCACGACCCCCTCCTCGTGGTTAGACGACTACTTTGACTGGGTGAAACCGCAGTCGTCCTGCTGCCGATACTACAACTCTACTGGAGAATTCTGCAACGCCTCAGtggtGGATCCCTCCTGTGTGCACTGCAGGCCTTCGACTCCCAGTGGCAAATTGAGACCTAATGGCACTGACTTCATGAGGTTCCTGCCAATGTTCCTGTCTGATAACCCCAACGTCAAGTGCGGGAAAGGAGGTCATGCTGCGTACAGCACTGCTGTAGTGCTGAAGGACAACAACACCAATGTGGGCGCCACCCATTTCATGAGCTACCACACCATCCTCAAGACGTCTGCGGATAACATCAACGCCATGAAGATGGCCCGAGAGCTGGCCAAAAACATCTCGCTCTCCATGGGGCTGGAGAACAAGACGCACGGTGTCTTTCCTTACAGTGTGTTCTACGTGTTCTACGAGCAGTACCTCACCATCGCCCACGACACGGCGTTGAACCTGGGCGTGTCCCTGGCAGCCATCTTTGTGGTCAGCGCCGTGCTGCTGGGCTTTGAGCTGTGCTCGGCCGTGCTCGTCTCGCTCACCATCGCCATGATCCTGGTCAACATGTTCGGTGTCATGTGGCTGTGGGGCATCAGCCTCAATGCGGTGTCACTCGTTAACTTAGTCATgAGCTGTGGTATTTCGGTGGAGTTCTGCAGCCATATCGTGAGGGCGTTCTCCATCAGTACTAAGGCTACACGGGTGGAGAGAGCTGAAGAGGCCCTGGCACACATGGGCAGCTCTGTGTTCAGTGGCATCACCTTAACGAAGTTTGGCGGGATCGTCGTCCTGGCTTTCTCCAAGTCCCAGATCTTCCAGGTCTTCTACTTCCGCATGTATTTAGCCATAGTGCTTCTGGGAGCGGCTCACGGTCTCATCTTCCTACCAGTGCTCCTGAGTTACGCAGGTCCGTCTGTTAATAAAGCTAAGGTCTTGGCAGCACGCAGCAGGTTCACCGGGACGGAGCGTGAATATCTACTCGCCAATTGACAGCACTGAGGAAGCTGAAACATCAATCCACAAGGGACTATGTGGGTACAGCAGCTtgtcacaaacacactaacacacgcacacatctcAACTAAGAGACCCTAACTCAGGATCCCTGCTAGGGAGAAcccaaaaaaaacctcacaaaaaaaaaaacagtttgtgtgaTTTATGGGAAATTTTTCCACTTTGGGATTCTGCTTTCGTCGATCCTTGCAACGGATGAACCAGGACCCATGACTAAATCTGTGTTCAAGCTATTTTTATAACACAGAATTACACATAcatgcaatattttatataacaagCAACTGAAACTGAAACGTGTGCCTGATCTCacggtttatttattttgtgtccACATTTATGATTTGTCAGTCTAATTTCATTAAGGGGATATGTATTATTCTGTCCGCTCTAACATGAATAGTCATTTGGCTATGAGAATTTTTTAATGAAGCCTCATTTTGATGCTTTAAATCACACtgcacgtaaaaaaaaaaaagtgaactaCAGCACCAGTGTTTAATTGGTTTAATTTATGGGATTcacacagaatttttttttccttccttaaCTACTGGTTATGGTTGCTCATCGCTGAAGATTCAGCATTTAAATACT

Function

GO:

id name namespace
GO:0035855 megakaryocyte development biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0030301 cholesterol transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG:

id description
K12385 NPC1; Niemann-Pick C1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381471 lncRNA upstream 9115 17631214 ~ 17631512 (+) True G322127
XR_004580280.1 lncRNA upstream 103467 17525571 ~ 17537160 (+) True LOC117599934
TU381408 lncRNA upstream 156983 17481913 ~ 17483644 (+) False fuz
TU381407 lncRNA upstream 158065 17481385 ~ 17482562 (+) False fuz
TU380963 lncRNA upstream 679893 16958745 ~ 16960734 (+) True G321704
TU381490 lncRNA downstream 56333 17721938 ~ 17786701 (+) True G322146
TU381586 lncRNA downstream 188943 17854548 ~ 17855258 (+) True G322233
TU381693 lncRNA downstream 408724 18074329 ~ 18074748 (+) True G322324
TU381739 lncRNA downstream 533235 18198840 ~ 18199709 (+) True G322365
TU381778 lncRNA downstream 563790 18229395 ~ 18231463 (+) True G322398
XM_026946216.2 mRNA upstream 4018 17570650 ~ 17636609 (+) True egfra
XM_026946305.2 mRNA upstream 123260 17514697 ~ 17517367 (+) True c1ql3b
XM_026946271.2 mRNA upstream 133240 17487387 ~ 17507387 (+) True gpt2l
XM_034314525.1 mRNA upstream 133868 17487387 ~ 17506759 (+) False gpt2l
XM_026946285.2 mRNA upstream 156950 17478834 ~ 17483677 (+) True fuz
XM_026946259.2 mRNA downstream 176844 17842449 ~ 17853870 (+) True yme1l1b
XM_026946314.2 mRNA downstream 194706 17860311 ~ 17872029 (+) True rab18b
XM_026946277.2 mRNA downstream 300288 17965893 ~ 17979122 (+) True wacb
XM_026946278.2 mRNA downstream 300583 17966188 ~ 17979122 (+) False wacb
XM_026946276.2 mRNA downstream 300587 17966192 ~ 17979122 (+) False wacb
XR_003404718.2 other upstream 9019 17570649 ~ 17631608 (+) False egfra
XR_004580277.1 other upstream 156950 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other upstream 156950 17478834 ~ 17483677 (+) False fuz
TU380835 other upstream 788203 16851445 ~ 16852424 (+) False LOC117599970
trnag-gcc_20 other upstream 1453586 16186971 ~ 16187041 (+) True trnag-gcc_20
TU381774 other downstream 560957 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other downstream 560957 18226562 ~ 18227136 (+) False si:ch211-162e15.3
TU381842 other downstream 750212 18415817 ~ 18422631 (+) False pex5lb
XR_004580282.1 other downstream 1150404 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 2773097 20438702 ~ 20440561 (+) True G323534

Expression Profile