RNA id: TU381603


Basic Information

Item Value
RNA id TU381603
length 4003
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC113546399
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17853847 ~ 17872108 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAAGGTACTGTATATGGAAAGTGTAGCTGATAAACACGATGTATAGTCAGCTACAACAGAAAACTATAAGGCAGTTGGATTATAAGTGAAATTTTATTGCAAAAGAAAACAGTACTGATGTTCTCTGACACACTTCCAATCCAATCCTAACGTAGTACAGAATGCAATCCAGACAGCGACATCCTCTAGAGTCAAGCAAATCGGAGCAGCGAGGATCTTCGACGGCTCGATAAACCGCTTGTgagatcaacacacacaaaggagCTGTATGCGAAAGACACGATCAATTGGTTAATTGCTGGAATTTCCATCAATCTGTACAAAAGATGTTTATTCTTTTgtctgatgcttttatccagaaATTTATGATACAATTATGTGAATAATTTTCAAGGTATATCAAGGAAAGTGCTAAACTCACGCCTGATTAATGCCAGGTGGGTTTATTAACCTTTTAAAAGTCAGCGAATGCTGTTTTAAACTTCACGTGACACATTATACCTGGATGTAGCACGTTAAACACATATCTGTTTCAGATTTCACAGTACTGGTACCCGCTCACACATTTGACTGAACCCATCCTCTCTTATATTCACCCCAcaaattcttgctcatttcagTATTTCAAAAGTTTCAGCTCATCAGAATACAGCAGGTGTGTCGGTGCAAACAGGAAACGACGACTGCACATGCTCTTTATTTGCTTGCAGGATGTTCGGGTGGTATCAGGAAAAGCAGAAGGCTACAGCCTCATAACATGCTTTTAACATGACTTTTACATATAGCCCCTTTAAAAATGGATTCGAACAGTCGGATTTATTGATTTTCAGATGAAGGCCTACTTCTCCCATCAAGAAAGTACTAATACCTgctttaaaataatatcagGTTTAATATACGCTCTCAGATATACACTCTCGGATAAAAAGGTGTTAATGATACTTATCGCTGAGGTGGTACTCTTAGAGTTTGAACCTTTAATATGTAATTTTGACatagtgcacctttaaaagGATTTAAGGAACATATTTACCTTTCTGACTGCTCTTCATGGAGGTGAAAGATTTGTAGTAAAGATACAAAGGGTTTAGGGTACCACAGCAGCGACAAGGAATGGTACCCTCCAAGTGTGTTTAGCTCTCCACTGATGAGGAATAGTGTAAATGAAATTAATCAGGACACAAACTACTGATATTAAACCCAGTTCTAGTGATTTATCAACAGTGACGGTCATGTTTAACACAGCGATTAGAGGCTTAACAAAGTCTAAAATAAGGagagttgttaaaaaaaaaaaaaaaaagcaattgaAATCGAGCCATTCGGATACAGCCAAACCTTTTCAAAAGACTAACTTTTCAAGCTTGAGTAGTTTGTGTAAGCAGGACGGCAAGAAACCCAGTACTCACGTGCTACAGTTGTACACATCAGTGGtccataaatgaaaataaagagagTTATTGCACTGTAAGATGTTCTACGGATGTAAAATCACTGCTTAGTCACCAGAGACGATAAAGGGAGAACAATAAGAACTCAGAAAAGCCATTCCTTATATTTTAGTATGAATATTTCTCAAGAAATGCTAGCAGGATCATGCTAAGCGAGGAGATGGAttataaaaacagcaaacaggAGGGTGTTTGGTGCCGGTTAAAAGCAGCCAACACTCgaaattattacaaaaataaggaaatatattatattagataGAGGAAAGAGGCTTGGAGAAGAAGCACGGGGTGGAACTTGATGGAAAAGTTAGGACAGTTTACCCCGGGAGTAGAGAAACTAATCCCACCCTCTTTCTTTAATGGCCcctgtttttaatttgtaataactataacatagagagagagaatgatgtcAGCATCGGTCCTTCTGCTTCAGTATAATGACATAGTGACAGCAACGGTAATTCAATGCAGCTCATGATAAGTTAGATAAAATACCATACAGAAATCGAAGTGGAAGGAAACACAGGGTGTGTGAACGTCCTCCGGCTGCCCGGGACGGAGCCGACCTTCGCCTCTCATTCAGAAGCAGGAAATcgcagtttgtttttttttcatctcatgTCTCAGTCCGGTGGAATTGTGGAAGTTAGATGAGGGAGCAGTATCCGCCACAGGCGCTGTAGCTCTGCGCCTGCTGCTCTCCGAGCTGAACGCCGTGATTCTGGACGCTGCTCTCCCACAGGCCCGGGGTCTGCAGGATCTTCTCCACCAGCTCCTCGAAGGCACACTGGACGCCGTCCCTGGTCTTAGCGCTCGCCTCTGAGGAGAAAAGACAGGAACGAGGGggaaaaaccaaaagaaaatcCCCCCTCAACTCCAAGAATTCCTACTTGGAAAATCAGGAAGGTCTCCTCAGCACCGGGTTCAGCACGTGACATTAAATCAATATGGCCGTCACACCATCAACCTCGACCGAGGTAGCacatctttacttttaaatatgttatactgtatatactaatatttgctttagatcaatcaacatacactTGTTAAATCTCtaacattgactatacagtttgctgctttcgggaggaaaatatacatcactcgtAGCACTaacgttagctggctagtttgttgctaacaaaagatgaacatggaggcgtccatatTTTTACCACTTTGTAGCCTGAATGTATGGAGgtcgaaaatgatgtaattcgaAGAATGTCTAGCtttctttttcccctaaaaGCTGTTTTATTTGTCGTTTCACTACTGGCACTGAAACATATGGCTTAAACACACTGAAAACTTGGAATGTCAGGTAGAGAATACCAGTAAGGATGACGGCAGACTAACAAACGCAGTCAGTCtgctaaagatgtctaaaaccttgtttcttttctcacaGTTTAATCAAGTTGTTGGAGAAGCGCACATAAGCCTGACCgatttgtaatcagataccagctgtaaaaaatgtattcaatgCCCCTACTctatcacatcatcatcatcatcaaaacagagaagagcatttacacacactgtataaaaaGACACTGATTAAGAAGACAAGAAATTTAGCCAACTGAACAGAAATGGCTGAAataattaatcagtgattatttcctcaccgatgttagcatgaacagacaccagcttaggaaagtgtgtatttttcatAACTATACATAGcagaaaatgtctaaatttgaTCATGTGAAAGTTTTTCGTTTCCTtttgatattttacattttgtatttcGAAACACGTGAACTGAGAGTTCAAGGATACGAGGCTCTGATGCAACGATGATGACATCAGTGTAGAGTGTAAGGCAACGGGCATGGGGCAACTCGACGACGCAAGCAGGCAGCGGGGGTCAGATTACACACCGAGTTCAGTGCTTTACgcaacacagaaacacatcacCGTCTTAATTCTCCAGATTTTTATCTGAACACTTTTTATTAACTCCGGCTCGTGTATATTTACTACATGATGATtcttgatatgttttttttccttgcttttgctttatttttgaaaataaagaaaaaaaggcagaaagaaaaGTTTAGTTTGCTGTTATTAAGTAAAATGATATCatggaaaacataaaaaaaaaaagttctggcagtgttcAGAGGAATACGCTGTGCTGATCCACAGCCTCTAATGATCAACACTCTTGAAAAATAgttgaaaaatacaacaaatattGGTAAGTCTAAggccatccctccatctccccTGACCGCTTGCCCGTACACAAGCTTACCGATGAATAGCATGGAGTGTTTACGAGCAAACTTCAGGCCCTCGTTCCTGTCCACCTCACGGTTGTCctgcagcaaaaaaacaaacatttatttcaatattttgaCACCTCAACATCGTGGGAGACAGAAGCAGTCACTGAACATCCTGAAGTTACTCTAATCATGCTCTAAAGAACAgaaatgtttctataataaatattaaattgctTAACATGGTGATTTCCCCCATGCTTACCCTGATCATGAAAGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381604 lncRNA downstream 13999 17852633 ~ 17853837 (-) True G322250
TU381605 lncRNA downstream 17464 17849152 ~ 17850372 (-) True G322251
TU381412 lncRNA downstream 386451 17480442 ~ 17481385 (-) True G322072
TU381314 lncRNA downstream 477917 17359788 ~ 17389919 (-) True G321998
TU381014 lncRNA downstream 894083 16973527 ~ 16973753 (-) True trnal-uaa_3
TU381679 lncRNA upstream 118656 17990764 ~ 17992868 (-) True G322310
XR_003404719.2 lncRNA upstream 471938 18344046 ~ 18346844 (-) True LOC113546439
TU381927 lncRNA upstream 473614 18345722 ~ 18346812 (-) False LOC113546439
TU381963 lncRNA upstream 554625 18426733 ~ 18427069 (-) True G322550
TU381964 lncRNA upstream 557551 18429659 ~ 18430003 (-) True G322551
XM_026946253.2 mRNA downstream 8423 17853847 ~ 17859413 (-) True LOC113546399
XM_034314510.1 mRNA downstream 26651 17785947 ~ 17841185 (-) False mib1
XM_026946298.2 mRNA upstream 5235 17877343 ~ 17890855 (-) True mkxb
XM_026946265.2 mRNA upstream 38287 17910395 ~ 17964294 (-) True LOC113546406
XM_034314520.1 mRNA upstream 38287 17910395 ~ 17964270 (-) False LOC113546406
XM_034314519.1 mRNA upstream 38287 17910395 ~ 17964270 (-) False LOC113546406
XM_034314521.1 mRNA upstream 38287 17910395 ~ 17964270 (-) False LOC113546406
TU381420 other downstream 367004 17500065 ~ 17500832 (-) True G322080
trnal-uaa_4 other downstream 786733 17081021 ~ 17081103 (-) True trnal-uaa_4
trnal-uaa_3 other downstream 894066 16973688 ~ 16973770 (-) False trnal-uaa_3
XR_003403441.1 other downstream 1248102 16619633 ~ 16619734 (-) True LOC113533663
TU380669 other downstream 1500832 16357574 ~ 16367004 (-) True G321462
TU381951 other upstream 522141 18394249 ~ 18394823 (-) True G322538
trnav-aac_21 other upstream 875064 18747172 ~ 18747244 (-) True trnav-aac_21
TU382290 other upstream 881664 18753772 ~ 18755593 (-) True G322826
XR_004576919.1 other upstream 1131131 19003239 ~ 19006379 (-) True tceanc2
TU382527 other upstream 1202892 19075000 ~ 19077917 (-) False G323011

Expression Profile