RNA id: TU381605


Basic Information

Item Value
RNA id TU381605
length 643
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G322251
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 17849152 ~ 17850372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atctCTGACAGTAAACATCATCCTATCAACGATTACAGGTTTTCTTTAATCCGTTTATTTGTTGTGTCCGCCGTagaaatccctgtgaatgagctgttactatagaaacgctaactGGAAACGATATTAGagcgagcacattaatataaacctgtgatctgcagctgtcACGGCTGCCGTTATAGAAGAATAATCAAcgtcttctgaccaatcagagtcgagaaTTCGTCAGGCTTTTGAATTAAACTCGATATGTAAAAGCTGTATAACAAGCGAATAACAGCTGactttttaactatttaacGATTCATTAGCACAAAAACCGAGCGAGTCTGACTCACGTGACCCAGAGTGGGGCCTCTCGGCATGATCGTAGCCTTGTTGATGGGCATGGCGTCTTTGGTGTAGTATGCGATGATGGCGTGTCCTGACTCGTGGTAGGCTGTGATCACTTTGTTTTTCTTATCTATCTCGGCACTCCGGCGCTCCGGGCCCATCAGGATTTTGTCCTTGGCGAACTCCAGCTCCTTCATGGTCACCATGTCTTTCCCGTCCACAGCAGCCTTCAAGGCAGCCTGGTTCACCAGGTTCTCCAGCTCGGCTCCGGAGAAACCCACCGTTCCTCTGGCAATGATCTCGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381412 lncRNA downstream 367767 17480442 ~ 17481385 (-) True G322072
TU381314 lncRNA downstream 459233 17359788 ~ 17389919 (-) True G321998
TU381014 lncRNA downstream 875399 16973527 ~ 16973753 (-) True trnal-uaa_3
TU380904 lncRNA downstream 1105137 16742906 ~ 16744015 (-) True G321652
TU380749 lncRNA downstream 1239595 16608816 ~ 16609557 (-) True G321536
TU381604 lncRNA upstream 2261 17852633 ~ 17853837 (-) True G322250
TU381603 lncRNA upstream 17464 17867836 ~ 17872108 (-) False LOC113546399
TU381679 lncRNA upstream 140392 17990764 ~ 17992868 (-) True G322310
XR_003404719.2 lncRNA upstream 493674 18344046 ~ 18346844 (-) True LOC113546439
TU381927 lncRNA upstream 495350 18345722 ~ 18346812 (-) False LOC113546439
XM_034314512.1 mRNA downstream 7967 17785947 ~ 17841185 (-) False mib1
XM_034314510.1 mRNA downstream 7967 17785947 ~ 17841185 (-) False mib1
XM_034314509.1 mRNA downstream 7967 17785947 ~ 17841185 (-) False mib1
XM_034314511.1 mRNA downstream 7967 17785947 ~ 17841185 (-) False mib1
XM_034314508.1 mRNA downstream 7967 17785947 ~ 17841185 (-) False mib1
XM_026946253.2 mRNA upstream 3475 17853847 ~ 17859413 (-) True LOC113546399
XM_026946298.2 mRNA upstream 26971 17877343 ~ 17890855 (-) True mkxb
XM_026946265.2 mRNA upstream 60023 17910395 ~ 17964294 (-) True LOC113546406
XM_034314520.1 mRNA upstream 60023 17910395 ~ 17964270 (-) False LOC113546406
XM_034314519.1 mRNA upstream 60023 17910395 ~ 17964270 (-) False LOC113546406
TU381420 other downstream 348320 17500065 ~ 17500832 (-) True G322080
trnal-uaa_4 other downstream 768049 17081021 ~ 17081103 (-) True trnal-uaa_4
trnal-uaa_3 other downstream 875382 16973688 ~ 16973770 (-) False trnal-uaa_3
XR_003403441.1 other downstream 1229418 16619633 ~ 16619734 (-) True LOC113533663
TU380669 other downstream 1482148 16357574 ~ 16367004 (-) True G321462
TU381602 other upstream 4957 17855329 ~ 17872108 (-) False LOC113546399
TU381951 other upstream 543877 18394249 ~ 18394823 (-) True G322538
trnav-aac_21 other upstream 896800 18747172 ~ 18747244 (-) True trnav-aac_21
TU382290 other upstream 903400 18753772 ~ 18755593 (-) True G322826
XR_004576919.1 other upstream 1152867 19003239 ~ 19006379 (-) True tceanc2

Expression Profile