RNA id: TU381790


Basic Information

Item Value
RNA id TU381790
length 4756
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G322405
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18338329 ~ 18343490 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTCATGCTCAAATCACAAAAATGACTCCAAGCAGCCATACTATATGTGGTATATCATATCACTCAaccagctccacacacacacacacacacacacacacaaaaccacaaccTACTAGTCTCCACAGCTCTTAATTCTtaaacctgacacacacacctctgtagACATGACATCAGCGTCCCGGGTCAGacaatcaatacacacacacacacaccacagagccCATTTTAGTGTAGACAGCTTTTCTGAGTGCATCCGATACACATCAggagcacacacacttcactaaagcagtgtgtgtgtggtgaaatcCAGCTCTCAGATAGCCTCAGACTGCCAATCAAAACAGGGAAGCGAACATGTTAAGTGGGCTTTAAGGTTAAGCACCTGGCGCTTAAAAGACAGTGATTTAGTGATTCTAGTGCTGATTTATTggttgtattttcattattctcatGAGAAGTTAGGAGTTGTGTTCTGCGCTGATGTCACTGGGGGGACAATATATTTGCTAGCGCAGTTAGAATGgtgtttaatgaaataaaaatcttcaGTGATCTCGTTtacactgtgttgtgtgttaacAGTATTAACATGAcagctgaagctttggaagctgacctgtttgagcagagtgtaaagatctggacagactaaagcgcCACTGCATTAccctctttaggtagagatggtGACAGCTAAATCTCACTGCAACATTATCAGCAGGTAGACGAATGGCTTTatgatgtataatgtataaaaccGCTGATGAAAGACAtttcaatggaaaaaaaaatttcagcttAGAATTTCATTACTTCATTTGGATGAAGTTCAAGATcacattaattataaagattaatctTAGAAACATTCAGAGTGGATTTTCACTTTACCTTTTGCATGTTACAGGGATCACTGCACTTTGGTCAACTTCAGACACTGAGAAGCTGATAAATTGTTAATGAGGTTGAATGGTGATCAAGTTACAGTTTTTATGATAAACAGAGGTGACATGTGGACACTACTGTAAGCTCAGGCATAACACAAGGCACTTTCTGGTTGATGTCTTTAGCGTAACACAAAAATGGATCCCAATGCAGCACAATCACCCTAACGAGTTTCTTttactatataaaaaaattgatCATGCTTTCTTCCATCTCATTCTCTGACTTTTCAATGACGGGCCATCCTTGCTCTTAAAACTGCTAGGGGATCATTTGTACTGTAGACAttgctattaaataaaatttcgACTTTATTTTATTGGGTACTGATTTTTAgcaaattcaaatatttaatacacCCCTGAATACAGAATGTGTACAATGCGCTAATTGCCAAAACAAAACTCCTCCCAAATATCTCGTTAtgccaaatctttttttttttttttTACAACTCACAAAATAAAAGTCAGGTTTATTGTTGaacaaacttcacacacacagacaggccaaggtaaaacaaatgcaaacgaaaaacaataagaaaagtAACTCCTTTTCTTTGGCCTAGCCCTCccatacaaacaaaacaaatgaaacaaaactagTTTATGGTACAACTAAAGTTCATACATAAAATCTGACTGGAATGCTCAGAGTTAAATGGCtgattttataaatgtttctgtttccAAAGTTTGTGAGACATGGTCAAACAAGTAAAATTTCATAAAGAAGCACCGTTTTGGTCACAGGAGATCACGATCAAGTGACTGATCCCTTAAcaatatgtacaaaaatataaaatgtaaataaaaatacaaacaaatcctCGTCTTGTGAACTTTGTCGTCGTGTTGGGGATCTGGGTGGTGGATTTTTCCCTCTAGAAAATTTTGCATTGGGGGTTAGTGGGTGAGACGTGGgaacttgggggaaaaaatgaccaTGTTTGATGTTTGAGTCCTTTATGCCACTGGCTCCAACAAACGTGCTGAAGATGAGCTCTACACCGGATCAGTAGCATCCAACAATCCTTTTAATCATCATCTTCCGGCTTGTGTTTCTTCGGGTCGACCTCGTCCTAGAGGGAGCAAAAGCCACAGATTAGAAGAGCAGAAGAGAAGTGGAGAGAAGACTGAGGAAACTAAACTCCTAACAACTTCCTGATGCTCCGCTACACATCCTCACCTCATCGTCCTCGTCATCCTCATTAGCCCCTCGTTTCGTTCCTCCGCCCAGTTCgtcctcttcatcctcatcctcatcctcaTCTCCGTCTTCCTCCTCGTCTTCTTCATCTACTTCATCCTCATCTTCTTCGTCGATCTCTGGCTCtccattttcctcattttcctgTTAAAACATATTTCCCTTATAGTAAGATCATCCTCCTCATCTCAGTCAAACCATAAACAAATCTTGACTTAAATGAATTGTTTAGTGTGCGCTACCTTTCCATTAGTGGCCTCCTTTCCATTTTCCTTCTCTTCAAGGAGCTTCTTCTCCTTCAAGTCCTGCAAAATGATTAAACATAGCCATTAACACGACGCCTTGTTAGAGGAGAGTGGCCTGGCTATTTAAAACCATCATTACGTCCAGTGGACTTGAGCCAAGATGGTGATTGAGGGAAAGGGGGGAAGAGCGCCCTCTGTCAGGTTGTGCGTAAAAGTGCAGCCATGGTCAGGACAACGCCATTGGCTGATACAGAGCCTTTccagctgtcaatcatttgGCGTAAGGACCCGCCTACTTAAGAGTTAGATGATTTGTAATACGACACCTCGGTGTTATTGAGATACCATGGGTATTGTAGTTCGGGTAATTTCGTGAACGCCATATGCTACGAGGAGGACACACCCGTGGAGCAGATCGCAGAAAAAAGGGACGGTCGTTAAGATTCAGGCGAGTCAGGGGTGGGAAAACAAGCTGACTTGGAAGACTTTGAAAGGACAAAGAAGGCCTGGCGCAtggctctctctttctctctcaacaTCATTTCCGAGACCATCATCCCAAAATGCGTACTGCACCCTCGCGCGCTAAACAGTGCGCCAAACTGGGGCGCGCGGCCATCCTCGCGCATGCACACTACCGTCCTACACAGTATGGACAAACAGTGCACAAATAGTGCACATAGCAATACGCTGCGTGCTATCTAATACAGTATGCGGTTTGGTGCGCAGCCAGAAGAGCTCAATCCACTCcccctccttccttccctccctcctgcCTGCTTTCACGCTATCTACCGGATTTAGGTCGAGAGGAACAAACTGGAGGCGGTCAGTCACTTTATCCGGCTTTTCACCGAAACCTGGTCAGCTAGAAGACCGCAGATGATTCACTTTCTATTCTACTAAAGTCCTCAAGTCTTTAAGCCCTGACGAGAACCAGCGAGGATTACAGAATTTCATCAAGCACACAGCACGCGCCACTACAATTTAGCGCAAcgctattattattagtagtagtagtattagtattattactaCTAGCCTGTTAATAAGTATCTGACACCTCTCTGGTGTCGTGTGTAATTCAGATTCTACTTTCGATGCATCCCCGCTAATAGTAACctaataatatgaaataatatggATTATTTACAGTGTGCATGCAACAAACCGAGTCTATATATCACCACAGAGCACTGGGGTTTATCTAGTCTTgcgaaatattaaaaaaaaaaatcctaatgcACACTTAAATATAGCCTAGATACAACTAACAGCACTTCCGAAATGTAAACTCGGAAGTAACAAGATATCAGATAAGCCTCGATCCACAACTGCGCTTCATGAACACgcgagcgaaagagagagagagagagagagagagagaggagggagatcCGGTATAGAGTCTAAATAAACCGATCCATAGCCTTTtaatacagacagaaagatgtgTGATGTAGgctagaataataaataaataaataaataacctaaaACGCGGGTGCttagaatgaaatgaaagctcAAGCACTGAGACATCCTAAACTCCAACCGAAAATAAACTTGTAGACCAAAACGCGGAATCTCAGGACGACACGAAGGAACATCTGAATAAATAATTCATCACTTCTGTCGCTTACAGAATGGTCAAGTTCCTGAGAATGGACACAAGGCACTTGAATAAAGGCCTGAGAACCCAACAGCGTGCAAATGCATCCCAGTAGAGCaggagaaatgaagaaataaatcagCGCGCGCGTTCACACGACTGGTTTACAGGGTAGCaggaataacaataataaataaaatcatcatcatcatcatcatcatcaggatCTCCGGCGGCGCCGCTCCGGTTCAAAGAGGAACCGAGAACCGACTGTAGCTTATAAACAAAGAACCCGCGCGAGGAGTGAGCGTTCACGAGCCTCATTCAGGACAATAACATCTAGATCTGTTGATTTGCCTCCAAATTCGTTTACAAATTCATCACTTTGAGAGACTGAGGATCTAAAACGGTCTCACGgggtttttcatttatttagtttcgGGACACAATAGCTGCCGTGGGTCCTTCAGTGTCGGCGCGCGAAACAGTAACGACGGAAACCTGTGacgaaataaaatgaatgaaaaaaaaaaaaaaaagatttatgtcGCTTTTCCGTGTTTCTTACCTTGGCGGAAATTTCCGTCGCGGAATCTACCTTGGTGTCTGCCATGGTTTATACTgactaataatataaataatgccaAAAAAAATGAACGTAAGAAAATACTTAAGTAAATCCGCCTCGCGCTGAGCTTTAATCAATATTAAGCTGTTTATTATATAGCTCTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381778 lncRNA upstream 106866 18229395 ~ 18231463 (+) True G322398
TU381739 lncRNA upstream 138620 18198840 ~ 18199709 (+) True G322365
TU381693 lncRNA upstream 263581 18074329 ~ 18074748 (+) True G322324
TU381586 lncRNA upstream 483071 17854548 ~ 17855258 (+) True G322233
TU381490 lncRNA upstream 551628 17721938 ~ 17786701 (+) True G322146
TU381819 lncRNA downstream 27237 18370727 ~ 18373883 (+) True G322429
TU381841 lncRNA downstream 88836 18432326 ~ 18432702 (+) True G322446
TU381857 lncRNA downstream 95677 18439167 ~ 18439866 (+) True G322462
TU382137 lncRNA downstream 371905 18715395 ~ 18720439 (+) True G322696
TU382184 lncRNA downstream 421702 18765192 ~ 18765602 (+) True G322738
XM_026946318.2 mRNA upstream 111189 18225921 ~ 18227140 (+) True si:ch211-162e15.3
XM_026946304.2 mRNA upstream 343651 17990725 ~ 17994678 (+) True bambib
XM_026946277.2 mRNA upstream 359207 17965893 ~ 17979122 (+) True wacb
XM_034314516.1 mRNA downstream 50533 18394023 ~ 18430022 (+) False pex5lb
XM_026946262.2 mRNA downstream 50533 18394023 ~ 18430022 (+) True pex5lb
XM_034314517.1 mRNA downstream 50533 18394023 ~ 18430022 (+) False pex5lb
XM_026946263.2 mRNA downstream 50533 18394023 ~ 18430022 (+) False pex5lb
XM_026946264.2 mRNA downstream 50533 18394023 ~ 18430022 (+) False pex5lb
TU381774 other upstream 111096 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 111193 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 706721 17570649 ~ 17631608 (+) False egfra
XR_004580277.1 other upstream 854652 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other upstream 854652 17478834 ~ 17483677 (+) False fuz
TU381842 other downstream 72327 18415817 ~ 18422631 (+) False pex5lb
XR_004580282.1 other downstream 472519 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 2095212 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 2294094 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 2571914 20915404 ~ 20915475 (+) True trnap-ugg_22

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU14416 True 3167 lncRNA 0.41 2 NC_056700.1 5702617 ~ 5705885 (+)