RNA id: TU381841


Basic Information

Item Value
RNA id TU381841
length 377
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G322446
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18432326 ~ 18432702 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGATTGTATTATTTCAcatatgttgaaaaaaatgatttattttcctttttaatccAAACAAAATGATATCACGATGTGAACGCGCATGAATCCTGTAATGTATCCAAATCCCTAACCTCCAGTTTTTAATCTAAATGCTCAATCTGCTTTCTGGCTATAATAATCGAATGTTACGCGTCATATCACCACTGCATTAATGACATCAGGATCCACAGCTCATAATGTAACACCTATAAACTATTTATTGGAAAAATCTGATTATTCTGGTAGATTTGGAATATTAAAGGTTGTATAAAATGAACACTCAGCATGTTAGAATACTTCATATAACCTCTGGGACTATTTTGTAAATAAGTCATGTAATTTAAACAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381819 lncRNA upstream 58443 18370727 ~ 18373883 (+) True G322429
TU381788 lncRNA upstream 88836 18338329 ~ 18343490 (+) True G322405
TU381790 lncRNA upstream 88836 18338329 ~ 18343490 (+) False G322405
TU381778 lncRNA upstream 200863 18229395 ~ 18231463 (+) True G322398
TU381739 lncRNA upstream 232617 18198840 ~ 18199709 (+) True G322365
TU381857 lncRNA downstream 6465 18439167 ~ 18439866 (+) True G322462
TU382137 lncRNA downstream 282693 18715395 ~ 18720439 (+) True G322696
TU382184 lncRNA downstream 332490 18765192 ~ 18765602 (+) True G322738
TU382190 lncRNA downstream 378403 18811105 ~ 18811652 (+) False G322744
TU382191 lncRNA downstream 378482 18811184 ~ 18812335 (+) True G322744
XM_034314516.1 mRNA upstream 2304 18394023 ~ 18430022 (+) False pex5lb
XM_026946262.2 mRNA upstream 2304 18394023 ~ 18430022 (+) True pex5lb
XM_034314517.1 mRNA upstream 2304 18394023 ~ 18430022 (+) False pex5lb
XM_026946263.2 mRNA upstream 2304 18394023 ~ 18430022 (+) False pex5lb
XM_026946264.2 mRNA upstream 2304 18394023 ~ 18430022 (+) False pex5lb
XM_026946296.2 mRNA downstream 2647 18435349 ~ 18446743 (+) False gnb4a
XM_026946297.2 mRNA downstream 2648 18435350 ~ 18449078 (+) True gnb4a
XM_026946302.2 mRNA downstream 21434 18454136 ~ 18477637 (+) False si:ch1073-184j22.1
XM_026946301.2 mRNA downstream 31113 18463815 ~ 18477637 (+) True si:ch1073-184j22.1
XM_026946310.2 mRNA downstream 55925 18488627 ~ 18489656 (+) True sft2d3
TU381842 other upstream 9695 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 205093 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 205190 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 800718 17570649 ~ 17631608 (+) False egfra
XR_004580277.1 other upstream 948649 17478834 ~ 17483677 (+) False fuz
XR_004580282.1 other downstream 383307 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 2006000 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 2204882 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 2482702 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2588487 21021189 ~ 21136847 (+) True G323615

Expression Profile