RNA id: XM_034314517.1


Basic Information

Item Value
RNA id XM_034314517.1
length 2417
RNA type mRNA
GC content 0.56
exon number 13
gene id pex5lb
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18394023 ~ 18430022 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCATCAACGTGGAGTCAGTCAGACAGTCAGTTAAGGTTATGGACTATTCCTATGTAAGCCTACTGTGCTGATATTGTGTATTAGGAGTCCATTCCAGCCGTAACTGAGGGTTAGTGTGACTACAGCACAGCGTGTCCTGTGGAAAAGCGCAGTCCCGTGCATGAAAGTGCGCCGGCATCATTTATGAGCCATGAGGCGGTTCCTCAGGAGGACCAATTGAAAATAGCGAGCAAAGGGAGGAGGGCGGTGTGAGTTGGGACAGGTCCTGCAGCGCAGGCAACGCGTCTTGTGGTTTTGAAAACATGACAACGAGACGCGAGTCGTGAGTTGCAGTGATCCGACATCCTCCGTGGCGTCCTCGCATGCACGCGCAGTCGGGACGCAGCACCTGACTCTGCAAGAGCCGCATCTCcatcagcttttttttccttcttcttcttcacctcCATCCCTACACTGAGACTGGCTGATAAAAGTGCACGAGCTGCGGACTTTCCAGCTCTTCTCCATCCGCGGAAGTGAAGATGTATCAGGGTCACGCGCAGGGGAAAGACTCGAGGGTGGTTGCCATGATGCTGAAGGAGTTCCCACGTAAGGCCTCCTCAGATGGAAACCCCCTCCTCACCGTCACAACCAAGctggGTAGCGAGCACCAAGAGAGCCGACCGTTGCTGAGCCCCTCCATCGACGACTTCCAGAGCGAGAGCAAGAGTGATGGAGCCACTCGACCGGTCACCTCTAACACAGCAGTCATCTCGACAGCGCTGGACCTGGTGGACCTGAGCGAGCCGTGTGAGAGGAGGTGGAGTTGGGAGCGCCGCAGCCCTCGCGCCTCTTCCAAGAACAGCCTCCGCAGGAAGAATACGGATGAGACGGAGCTGATCCAGGTGGAGACCGAGCAGCTCTCGCCTGGACACCTGAACCCCGAGAGAACCTCGTTAGACTCAGTGAGCAGCTCACCCCGGGACAGATGGGACGAAGTGAGCCTTCACCCAGACAGCGCCTGGGACGGAGGGAGGAAGTGGAGGTATGAGAGGAAGAGGTGCACCTCACATCACTCCTCCAGCGAGCTGCTCTGGTCTGCTGACTTCAAAAGCAACCTCTCCAACAAACACACGCTGGAGATGAGCATGAGCATGGAGTCTGACCCCGGGCCTACATCACAGTCAGACACTGAGTTCTGGGATAAGATGCAGGCCGAGTTGGAGGAGCTCGCTCGACGAAACTGGCTGGAAGACTTGGAGAGTAAAGGCCAGACTCCAGCCAAGCTTTCGCCCAATGAGACGGGTTACTTTTTCCACATGAATAATCCGTATAAAGACTGGCCTAATGCGTTCGAAGAGGGACTGCAGAAATCCAGAGAGGGCGACCTGAACAGTGCCGTCCAGCTGCTGGAGGCAGCCATCTTACAGGATCCTCAGGACTCCGAGGCTTGGCAGGTGCTGGGCACCACGCAGGCGGAGAACGAGAACGAGCAGGCCGCCATCGTCTGCCTTCAGAGGTGTCTGGAGCTGCACCCGAATAACCTGAGTGCTCTCATGGCGCTGGCGGTGAGCTTGACCAATGCGGGACGGCAGCAGGAGGCGTGTGAGGCTCTGCACCGCTGGATCACACACAaccccacctacacacacctcctacaggAGCGCAGCGCTCTGGACGGCTCACCACTGCCCCAACGCAGGGGCTCCAGCATCTCCCCCATCCCCACTCTCGGATGctctCAGCTGGTGGAGGTGTTGGAGCTTTATCAGGAAGCCGTGCAGCAGAACCCGGGCTGTGTGGACCCTGATCTGCAGACCGGACTCGGCGTGCTCTTTAACCTCAGCTCTGAGTTTGATAAGGCTGTAGACGCCTTTAATGCAGCGCTGTCCGTACGGCCTGAGGACTATCTGCTGTGGAACCGGCTGGGGGCGACTCTGGCTAACGGAGACCGCAGCGAGGAGGCTGTTGAGGCCTACACACGAGCTCTGGAGCTGCAGCCTGGCTTCATCCGCTCCAGATACAACCTTGGAATCAGCTGTATCAACCTCGGAGCACACAGGGAAGCAGTGAATAATTTCCTGACGGCTCTGAACCAGCAGAGGAAAAGCAGAAGCCACCAGGTGATGTCCAGCAGCATCTGGGGAGCCCTGCGCATCGCTCTGTCGCTCATGGACCTTCCCGAGCTTTTCCACGCCGCCAGCATCGGTGATCTCGACCTCCTCATGCGGGCTTTCAATATGGACATGTGACCCTGAACCTAAAAAACCACCAAACTGATGAGTGCAGCACTAATGCtgggctttttaaaaatattagtgAAGGCCATGCGACACACACCGAGCGCTTTTGGTGTGATTTACTTATTTGTATTTCTGCTGGTGTGTCTGCTACTGATTTGCAGTTTGCACAGAGGAGGGTGTggacttcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381819 lncRNA upstream 20140 18370727 ~ 18373883 (+) True G322429
TU381788 lncRNA upstream 50533 18338329 ~ 18343490 (+) True G322405
TU381790 lncRNA upstream 50533 18338329 ~ 18343490 (+) False G322405
TU381778 lncRNA upstream 162560 18229395 ~ 18231463 (+) True G322398
TU381739 lncRNA upstream 194314 18198840 ~ 18199709 (+) True G322365
TU381841 lncRNA downstream 2304 18432326 ~ 18432702 (+) True G322446
TU381857 lncRNA downstream 9145 18439167 ~ 18439866 (+) True G322462
TU382137 lncRNA downstream 285373 18715395 ~ 18720439 (+) True G322696
TU382184 lncRNA downstream 335170 18765192 ~ 18765602 (+) True G322738
TU382190 lncRNA downstream 381083 18811105 ~ 18811652 (+) False G322744
XM_026946318.2 mRNA upstream 166883 18225921 ~ 18227140 (+) True si:ch211-162e15.3
XM_026946304.2 mRNA upstream 399345 17990725 ~ 17994678 (+) True bambib
XM_026946277.2 mRNA upstream 414901 17965893 ~ 17979122 (+) True wacb
XM_026946296.2 mRNA downstream 5327 18435349 ~ 18446743 (+) False gnb4a
XM_026946297.2 mRNA downstream 5328 18435350 ~ 18449078 (+) True gnb4a
XM_026946302.2 mRNA downstream 24114 18454136 ~ 18477637 (+) False si:ch1073-184j22.1
XM_026946301.2 mRNA downstream 33793 18463815 ~ 18477637 (+) True si:ch1073-184j22.1
XM_026946310.2 mRNA downstream 58605 18488627 ~ 18489656 (+) True sft2d3
TU381774 other upstream 166790 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 166887 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 762415 17570649 ~ 17631608 (+) False egfra
XR_004580277.1 other upstream 910346 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other upstream 910346 17478834 ~ 17483677 (+) False fuz
XR_004580282.1 other downstream 385987 18816009 ~ 18871360 (+) True slc44a5a
TU383181 other downstream 2008680 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 2207562 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 2485382 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2591167 21021189 ~ 21136847 (+) True G323615

Expression Profile