RNA id: TU381990


Basic Information

Item Value
RNA id TU381990
length 2312
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id LOC117599933
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18474224 ~ 18485480 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCAATAGGATGCGTCTAATTGTATCACGTGATTTAGAACCCCCCTAATAGTTGGTCCAATCACGTGACCTGGACTAATTGAAGTGATTTGTTTGTaatagtgcagcaggtggtttTCATGGCAAAATATTATCATGAATTTCGattataaacatgaaaaatggaGCCCAAAAGtgaagagaaaagagggaaaaggaaTTGGACAGCACAGAACTCGacttttttaattgattaattaatttatttaaatatttggtcCTTCTGGTACGTCGTCTGGAGGAAGTCTGACTGctccaggttcccgGTTCGATCCTGATCTCAGGATACTGTTtgtatggagtttcacatgttcacctcgtctgcgtgggtttcctctgggttctccagtctcccaaaaacataccagtagatGAAcaggctatgctaaattgctccaaggGTATAAGGTTCCTGTCAGCAGAATGCTGAACACTCCTCCTGCAGGACTCACGCCTGTTACCGTCTCCAGAGACCTGCAGCACCATCGCAAAACCATTCATCATCTGCTAAGTGGCtttgagtgtgtttgagtgcaGAGCTCATGTGTGTTTGGAACGTTGCCATGTCTGATACTTTACCTCATTCCTGCTGCCAAATAATGAGCAATGAATTGATTGAATGAATAGGTGTGCTGATGTACATTgacattacaaaatataatcCCACTTTTGTCTTTCATTTAGGAAACACTACCCTTGTAACAGTTACAACATGTATTAGGAAATACTCATGTAGTTCCTTCTGTTAatgtttttctaattttttttttaacaaagcttctctttcttctctcagaCTACCTTAGAAGAGTCATTTCACTGCATCTAAATAGATGGACATGATCTCAGAAGCGTGACAGTAAATGTGTACATGATGACTTTGTTAAGGCTGTTTGTAAGTGCTGCTCCTCACACGGGCAACCAAAGAGAACCAGATTCAACACAGGGATTGGCAGATCAGGAATGATGTCATTACCTTAACATGTATAAAAGGGAGAATGTCGACAACAGGTTTCCACTCATTATTGTCTGTCCCATATATCGGCCGAAGTTTGCATATTCCAGCTTTACGCTAGTTTTTGTACTTTGTATACCACAGGTCTAGCGAACTGTAAATTGTGTATGTAAACTGTATTCACATCTGTACTTGATACACTTTAGCATTTTATCAGCTTGTGTTAATTATACAACTAAAAATGTGGCATCAAGTTGTAACATTTATAAACCTTGCATAAACATCTtgagaaatggggaaaaagcTTGACAGATTGAGAGCTGCAGTGTCCAGAAATTGTTTTAGTAATCTGAAAATTTCAGCCACCCTCATAGTGCACTGTGGGTAAtatacactaaatggccaaaagtttgtggacacctgaccatcacatccatactGTATAGgttttttgtatgctgtagcattataatttccctttcTTGGAACTAAGGGACCCCAACCTGGTCCAGCAttacaatgcccctgtgcacaaagtgaagtccttaaccccactgaacacctttgggatgaactggcaCTTTGGCGACTACACCCCATGCCTCCTAGCATGACATAAGTGCCTAGCCTAACTAATGCTGATGTGGCTGAATGAgaaaatcctcacagccacactacaaaatctagtgggaagccttcacagaagagtggaggttattataacagcaaaggggaataagtttgggatgttcagcaagcacaagtgatggtcaggggtacacaaacttctggccatatagggTCCCTTGAAAACAAAATGCGttatagcatttatttatttatacatggCTAACGTTATAATAAGCACAGTAACCAGAGACGATTTATAGCTAAATCTGCTGAACACATAACCATGACTTTGTACTTACATGTTGCTCTGACAGAGAGACTCGATACATATGGAGGCCTTCACACTGTCTTTTTGTCGTGCCTGGGTCCTTTTCTGAGTCTCACTGGATTCTGAAAAAACACAATGTAATGAGGGATGCGTTGTAGTGGGTGGATGCTGGGTGTAAAGAACACACCCTGTTCCCCTGAGCTTTATCTGTCactgctgaataaataaatgatgcaaCCACGCTGCAGGGACTGCACGAGCTTTAACATGCAGAATGATACAATGATTGTGGTTGGAGGCAGAATGTGAAATATTCTCAGTATGAAGACCATACAGTTTAATATCAGAGTTGCCAGTACATCACAGTCATAGATGAAAAGCTCTTTAGTAATTGTACTTCACTGCTTTACATCATTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381965 lncRNA downstream 41505 18430135 ~ 18432743 (-) True G322552
TU381964 lncRNA downstream 44245 18429659 ~ 18430003 (-) True G322551
TU381963 lncRNA downstream 47179 18426733 ~ 18427069 (-) True G322550
XR_003404719.2 lncRNA downstream 127404 18344046 ~ 18346844 (-) True LOC113546439
TU382292 lncRNA upstream 270893 18756373 ~ 18756647 (-) True G322827
TU382296 lncRNA upstream 279279 18764759 ~ 18764999 (-) True G322831
TU382315 lncRNA upstream 326530 18812010 ~ 18812377 (-) True G322849
TU382364 lncRNA upstream 457098 18942578 ~ 18956617 (-) True G322889
TU382356 lncRNA upstream 499716 18985196 ~ 18986806 (-) False mrpl37
XM_026946300.2 mRNA downstream 93734 18373327 ~ 18380514 (-) True phb2a
XM_034314537.1 mRNA downstream 130404 18340023 ~ 18343844 (-) False ptmab
XM_026946316.2 mRNA downstream 130737 18340023 ~ 18343511 (-) True ptmab
XM_026946248.2 mRNA downstream 205914 18229954 ~ 18268334 (-) False dlg1l
XM_034314535.1 mRNA upstream 799 18486279 ~ 18488416 (-) False si:ch1073-184j22.2
XM_026946313.2 mRNA upstream 799 18486279 ~ 18488415 (-) False si:ch1073-184j22.2
XM_034314534.1 mRNA upstream 799 18486279 ~ 18488415 (-) True si:ch1073-184j22.2
XM_026946217.2 mRNA upstream 5457 18490937 ~ 18516265 (-) True wdr33
XM_026946218.2 mRNA upstream 5457 18490937 ~ 18516264 (-) False wdr33
TU381951 other downstream 79425 18394249 ~ 18394823 (-) True G322538
TU381602 other downstream 602140 17855329 ~ 17872108 (-) False LOC113546399
TU381420 other downstream 973416 17500065 ~ 17500832 (-) True G322080
trnal-uaa_4 other downstream 1393145 17081021 ~ 17081103 (-) True trnal-uaa_4
trnal-uaa_3 other downstream 1500478 16973688 ~ 16973770 (-) False trnal-uaa_3
trnav-aac_21 other upstream 261692 18747172 ~ 18747244 (-) True trnav-aac_21
TU382290 other upstream 268292 18753772 ~ 18755593 (-) True G322826
XR_004576919.1 other upstream 517759 19003239 ~ 19006379 (-) True tceanc2
TU382527 other upstream 589520 19075000 ~ 19077917 (-) False G323011
XR_004580317.1 other upstream 1013081 19498561 ~ 19507197 (-) False kdm4ab

Expression Profile