Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU382137 |
| length | 420 |
| lncRNA type | sense_over |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G322696 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 18715395 ~ 18720439 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU381857 | lncRNA | upstream | 275529 | 18439167 ~ 18439866 (+) | True | G322462 |
| TU381841 | lncRNA | upstream | 282693 | 18432326 ~ 18432702 (+) | True | G322446 |
| TU381819 | lncRNA | upstream | 341512 | 18370727 ~ 18373883 (+) | True | G322429 |
| TU381788 | lncRNA | upstream | 371905 | 18338329 ~ 18343490 (+) | True | G322405 |
| TU381790 | lncRNA | upstream | 371905 | 18338329 ~ 18343490 (+) | False | G322405 |
| TU382184 | lncRNA | downstream | 44753 | 18765192 ~ 18765602 (+) | True | G322738 |
| TU382190 | lncRNA | downstream | 90666 | 18811105 ~ 18811652 (+) | False | G322744 |
| TU382191 | lncRNA | downstream | 90745 | 18811184 ~ 18812335 (+) | True | G322744 |
| TU382193 | lncRNA | downstream | 92064 | 18812503 ~ 18812848 (+) | True | G322746 |
| TU382194 | lncRNA | downstream | 94175 | 18814614 ~ 18814817 (+) | True | G322747 |
| XM_034314504.1 | mRNA | upstream | 1687 | 18692192 ~ 18713708 (+) | False | LOC113546386 |
| XM_034314528.1 | mRNA | upstream | 47823 | 18663158 ~ 18667572 (+) | True | cwc25 |
| XM_026946308.2 | mRNA | upstream | 77691 | 18585063 ~ 18637704 (+) | False | fgf12a |
| XM_026946307.2 | mRNA | upstream | 77691 | 18596537 ~ 18637704 (+) | False | fgf12a |
| XM_026946309.2 | mRNA | upstream | 77691 | 18612197 ~ 18637704 (+) | True | fgf12a |
| XM_026946146.2 | mRNA | downstream | 27088 | 18747527 ~ 18754060 (+) | True | mffb |
| XM_026946147.2 | mRNA | downstream | 27088 | 18747527 ~ 18754060 (+) | False | mffb |
| XM_026946325.2 | mRNA | downstream | 36290 | 18756729 ~ 18763488 (+) | True | bpnt2 |
| XM_026946330.2 | mRNA | downstream | 70906 | 18791345 ~ 18797861 (+) | True | penka |
| XM_026946133.2 | mRNA | downstream | 78764 | 18799203 ~ 18810210 (+) | True | sdr16c5a |
| TU381842 | other | upstream | 292764 | 18415817 ~ 18422631 (+) | False | pex5lb |
| TU381774 | other | upstream | 488162 | 18226562 ~ 18227233 (+) | False | si:ch211-162e15.3 |
| TU381775 | other | upstream | 488259 | 18226562 ~ 18227136 (+) | False | si:ch211-162e15.3 |
| XR_003404718.2 | other | upstream | 1083787 | 17570649 ~ 17631608 (+) | False | egfra |
| XR_004580278.1 | other | upstream | 1231718 | 17478834 ~ 17483677 (+) | False | fuz |
| XR_004580282.1 | other | downstream | 95570 | 18816009 ~ 18871360 (+) | True | slc44a5a |
| TU383181 | other | downstream | 1718263 | 20438702 ~ 20440561 (+) | True | G323534 |
| XR_004580310.1 | other | downstream | 1917145 | 20637584 ~ 20659411 (+) | False | arhgef4 |
| trnap-ugg_22 | other | downstream | 2194965 | 20915404 ~ 20915475 (+) | True | trnap-ugg_22 |
| TU383298 | other | downstream | 2300750 | 21021189 ~ 21136847 (+) | True | G323615 |
