RNA id: TU382250


Basic Information

Item Value
RNA id TU382250
length 2752
lncRNA type sense_over
GC content 0.35
exon number 3
gene id ssbp3a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 18944698 ~ 18985082 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTGTGTCGAGCCACAAAGGTGGCAAAAGCCTGGCAGACTTTCCAGTGGCAGTTACTGTACAGGTCCTCACAGCTCACCACTATCCCcaccttccacacacacacatacaacacactccctgtaATCATTCTTTAAACTTTACGTCGTTTTGTGTTTTCGATTTTTATAGCCATTATTTTCGACTTTTAGAGACCTTTCCTGTTCGGTATGTGATTGGCTCGACTATTTATTTTGCAGACAATCCCAGCGCGTAATGACGAAGATTAAGGATcgacatttttacaatttttactttttctgaCGCTTGCTAACGAGTTATCTAACGTGCACGTTGGACTATAATCGCCCATCCTTAATTAGGTCTCGTCTCAGAttcatcagatttttttctctgtattcaGGATATAATCTGAAACGACTTGCCGTGATTTTGTAACTCAAGCACAAAGCAGGGTTTGGCCTCCATTAGCGCACTGATAAACATGTTTAGCTGTGCTTTTTCCTGTccgtgtttaaaaaaaaaaaaagcttttccaCTTTAACCCTTTCCTGCCACTCCATTAcaaaaccaggaaaaaaaatcctacattcTGTGAGTTACAATGACGGTGTGGAGACGGTGCACTGCAGAAAATCAGGGCAAGCCGCCATAATTAAATTTTGACTAGTAAGAATTTAAATTTTCGACTAGTAAAAGGTTCAGGTACACATATCCATATCAGCTTTTAACTAGCAGGAATGTAATTACAGATATCTTGACTTCCATTTTTACTAGCAAACTTTCACAATCAAGTTGTGTAATTTTCAAAGTACAGTTGTAGATATCTGTAATAAGATTTTCTATTAGTAAAAACGGAATAGTGGATATGAGAGACAGGAAGTCAGTGCAAGTCAGGGGTGATTTATGAACACTCAAAACTGGATTATCTTCAGATCTCTTCAGTATGAATTTGgcctagtttaaaaaaaaaactacaattcTGACTgactaaaaaattaaatctcaGATATCTTAAACTGAAGTTCTTTATTAGTAAAAGTTCATTTACATCCTACCATTAAAAGCTAAAACGGCTTGCCATAACAAGTGAAAATGACTGTAACATAGTCTAATTTATCTACTATTTCCTTTCATAaggaattattattttgattaaagctatttctagacatttttactcatttcaagcttgtcttgttctattggcacatcgtttttctaattttaagcattaagTATTTCTGAAAAGATGTGAAATAATCTgctaataaaataagaaaattgcTTGAAacataaaagcttaaaaaaaaaaaaacaaacaggcaaattaatattatatttgatttataataattgcgtcataagaaatattagataagtTGGGGAAGAAAAGTTAGAAAAGTTTTCCCTTTGCTAAGATATCGTTTTTTGCATCACTGGTTGTGAAAAGTTTTCAAGCGAATAAATTTATTCTCATCACATTCCAAACAACTCGTTTATAAATCTGtatatatctttaaaaacaaatcctcAATTTGTACGAATTCTCCATTCACATCCGAAcaaaatgtatgtgtgcatgcgaGCTTCGTTTAATATCCGTAACCAGAAGCTCATTAGCGGAACgatatttacacaaataagAAGAAGTGTTccgtttctttctttgtgtttttttacaaaaggaataaaacactcaggttgtgctgttacaggaaaataatcaacaatacggagttactgttacaacgtCCCCCGAACCAGCACATGccaacgtgttttattcctcttataccacagcgattacaattatttatttattaaagaacatcacaatactttttatccatttataggtagatatttaatgttgtgaaacgtccGAGAAACAGGTTCTCACTCACGTTATAGCGGCTATGAACAGTctctccctcaccagcctctctctctttttcccctcgCTCtacaagttaataagacaaaaggaaaagaaaaaaaaaaaaaacacacagctgccGAGAAACCGTGAAAAGCGTAACTTTGTAAATCATAATGTCTGAAAactaagttacagctttacctctgacactggagactccttccaaaagtgtTCAATAAAGTGTTCAATAAACGtcatcaacgattacacacacgtttattcgtaaagttgttactgtagaaatgataacgtattaggatgagtgcgttaatataaacctgggatttgcagagctgctgttacagagaatGAATCAACAGAatcaagaataaaataaaatcatgaatcAGGACGTTCCACTCGGGCAGGAAGGGgtttaaagttgtttttattACTCTCTTCTCAGGAGACTGGACGTTTTTCCTCCACTGCCGAACTGATCTCACTGCTTTCTCTCACCTTGTTTAAAAAGGACACCAGGCGATGACACCTTTAAATCAGATATATTTTGATAACTTTGTTAAAAAGTCTTTTCTGAAACCGTTTTACTGCTGAACGTCTCGGATATCCgttctggacacacacacacatatatatatatatatatatatatacacacacacacacacacacacacacacacacacacacgcgttttgctgtataatatttttctgctctaatgtttattgtttacattgttcCTCAGAAAGCAAAGCTATACAGAAATTATGACTGATTAAATTATTTTGCTGTCCATGAAACTGATAATGAATGCAAAACTTCTTTCTGCCTCTTCTCAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382194 lncRNA upstream 129881 18814614 ~ 18814817 (+) True G322747
TU382193 lncRNA upstream 131850 18812503 ~ 18812848 (+) True G322746
TU382191 lncRNA upstream 132363 18811184 ~ 18812335 (+) True G322744
TU382190 lncRNA upstream 133046 18811105 ~ 18811652 (+) False G322744
TU382184 lncRNA upstream 179096 18765192 ~ 18765602 (+) True G322738
TU382280 lncRNA downstream 8952 18993758 ~ 18994623 (+) True G322817
TU382465 lncRNA downstream 122580 19107386 ~ 19109334 (+) True G322957
TU382490 lncRNA downstream 219872 19204678 ~ 19218238 (+) False gng12a
TU382511 lncRNA downstream 329073 19313879 ~ 19316048 (+) False LOC113546339
TU382639 lncRNA downstream 449424 19434230 ~ 19438075 (+) True G323104
XM_026946200.2 mRNA upstream 7908 18931059 ~ 18936790 (+) True fam151a
XM_026946198.2 mRNA upstream 19125 18919067 ~ 18925573 (+) True cryz
XM_026946199.2 mRNA upstream 19125 18919067 ~ 18925573 (+) False cryz
XM_026946110.2 mRNA upstream 77900 18816009 ~ 18866798 (+) False slc44a5a
XM_034314552.1 mRNA upstream 77900 18854562 ~ 18866798 (+) False slc44a5a
XM_026946356.2 mRNA downstream 10751 18995557 ~ 19002207 (+) True cdcp2
XM_026946319.2 mRNA downstream 21721 19006527 ~ 19014193 (+) True cdc7
XM_034297785.1 mRNA downstream 21721 19006527 ~ 19014193 (+) False cdc7
XM_034314834.1 mRNA downstream 43075 19027881 ~ 19042630 (+) True rpap2
XM_034314836.1 mRNA downstream 43075 19027881 ~ 19042630 (+) False rpap2
XR_004580282.1 other upstream 73338 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 522067 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 717465 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 717562 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1313090 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 1453896 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1652778 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 1930598 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 2036383 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 2150313 21135119 ~ 21136847 (+) False G323615

Expression Profile