RNA id: TU382465


Basic Information

Item Value
RNA id TU382465
length 1675
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G322957
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19107386 ~ 19109334 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGACGAGGAAGACTGTATGAGAGAACAGCTTTCAGTTCAATagggcacttttttttttctttaaaatatacattttatctaAATTTCACTCAACTTTGATTGCACATTAGTTCATCATCCTGTTTATCAGGTTACATTTAGACAGAAATTCTCCAAGTgcaaattatttgttttaagGTATTAACAGCATTAATTTTGGGGCGGGGTTTTAGATCGAGGGATTGGTTACTgagatctgtttttttctctctctctctctctctctctctctctctctctctctctcttttatttctgagattttttttttcacgtttgTTATTTTCACACGTAGACTAGGAAACCTCAGACAAAGCTCCTTCACGTTGCATACGGAGTTGTTATGTTACGCTTAAGCgaaattttgttcatttcatcaTCCACACAAGAACTGTCAAAGgtcTCGGTGCTATTTATTGCTtcggtgaaaaaaaaaaacaaaaaaaactgtacactAACGAGATGTTGGAGTTCAGTTCCCGTCAGGATGATTTATACTTCACTGTAAGAGCAGATGAGAGAATGTTCATGTCTGCGTTCGTCGCCTCTACGCATGTCCTGATTTTCCCATCACGGTGTACGTGGGAcgtgttaaaggaaaactccaccctgaacgaCCTGCGTGTTAATCTGTAAAATTAACACCTGAGCTTCAACAGCATCCGAGATTTGTTCTGTACTGAAACCCTGAGACTTTCTTTCATGGACATGTTGGTTCATTTTCactttcctacattacccacaatgccgtgctGATTGCGGCGCAGTGGGATTTTGCTCTCGCTTCATCTCTAGTTAAgggagagcgatgcagcggcgctttagtctgtccagctctctgaCTTTCCTCTTCTGTACACTCAGCTTCCAAAGCCTCAACTTTCACGCTAACACCGCCGCCAACGCCGTCGCTAACTAACCAAGTCGAGTCAGAGTTCTGCGATGAATTCTGGGACTTCTgagtctccactacttctacgcTATTAATGATGTTGCTTGTTAATAAGATGAGAGTAAAGAAGCGCTCGCTCTTTTGATTTTAGGAGcgaacagcaaaacctgaccgTTATCTCCGTGTTCGAGTTCGTCGAAATGTTTTTCTAACTTTAAACATCATcgtaactgcgctagcaataacAACAACGTGACATCAGAGCGACACACAACCTCtgtcttctcacagaaataacCATCATACAACAACCAACAAAGCAGCAGCAgaatcactaaacccatcacaaATATTACAATAGAAACATATTGAGTGTGTTCCAGCgtggagtttttctttaataaatgtggCACAATCCGGAGGAATCCTGTAGCGCAGGGGGGAGGAGCGCTATTTATTCGGCACATGCCTGTTCAGTTTCTCGTGTAGCATTAATTGCTGAATTTCTGAGACGTTGTTTTGTTCAGTTCAgactgtatttttgtttctatagtgaATGCCCTgcgttttaaaaaataaagtgttattgACCCACTCATCTCTGAATGAGCGCTGACTGTATCGGCGCAGGTTTCTGCTCTAAGGCAAGGGTTTCTTTCGATCTCAACACTGATACCTCttttatttcagtataaaatgtgtatgaaatgtTTCTTACTTGCTGTACCAGTACTACATCCATG

Function

GO:

id name namespace
GO:0032044 DSIF complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382280 lncRNA upstream 112763 18993758 ~ 18994623 (+) True G322817
TU382249 lncRNA upstream 122304 18964741 ~ 18985082 (+) False ssbp3a
TU382250 lncRNA upstream 122580 18944698 ~ 18984806 (+) False ssbp3a
TU382261 lncRNA upstream 148067 18959083 ~ 18959319 (+) True G322802
TU382194 lncRNA upstream 292569 18814614 ~ 18814817 (+) True G322747
TU382490 lncRNA downstream 95344 19204678 ~ 19218238 (+) False gng12a
TU382511 lncRNA downstream 204545 19313879 ~ 19316048 (+) False LOC113546339
TU382639 lncRNA downstream 324896 19434230 ~ 19438075 (+) True G323104
TU382711 lncRNA downstream 403390 19512724 ~ 19523033 (+) False G323168
TU382712 lncRNA downstream 403390 19512724 ~ 19523033 (+) True G323168
XM_034314913.1 mRNA upstream 1237 19094922 ~ 19106149 (+) True mtf2
XM_026946360.2 mRNA upstream 29520 19073707 ~ 19077866 (+) True rpl5a
XM_034314834.1 mRNA upstream 64756 19027881 ~ 19042630 (+) True rpap2
XM_034314836.1 mRNA upstream 64756 19027881 ~ 19042630 (+) False rpap2
XM_034314835.1 mRNA upstream 64756 19027883 ~ 19042630 (+) False rpap2
XM_026946323.2 mRNA downstream 954 19110288 ~ 19136781 (+) True ccdc18
XM_026946173.2 mRNA downstream 34274 19143608 ~ 19159205 (+) False scinlb
XM_026946174.2 mRNA downstream 37300 19146634 ~ 19160143 (+) True scinlb
XM_026946336.2 mRNA downstream 54341 19163675 ~ 19187632 (+) True wls
XM_026946342.2 mRNA downstream 95324 19204658 ~ 19220229 (+) True gng12a
XR_004580282.1 other upstream 236026 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 684755 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 880153 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 880250 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 1475778 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 1329368 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 1528250 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 1806070 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 1911855 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 2025785 21135119 ~ 21136847 (+) False G323615

Expression Profile