RNA id: TU382947


Basic Information

Item Value
RNA id TU382947
length 3050
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G323358
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 19847999 ~ 19914015 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAAACCGTATTATTCTTTgattaatgatgaattaaaaGCATATTTTCGGACACGGCTGTGATTAAATGCCTCAGTGTCGTTAAATTGAACACGACTCAGAGCTCAGAGTAATAATTTGCGCACACagaaccttctttttttttttttttTGAGCAACTCCGATCAAAAAGCACGAAGCCCCGCCTTCTTCTTTTCTATTGGCTGAGAATTCTCTGGTCAAAAATCCACCGAGATTAAAAAACTGCGTCTTTCACGTCTCACGTCCGTTCCCCTTCGGTGAGTCGTCTTTTCCGCCTGATGAATTTCATTCAGAAAACAGGAAGGGACGTGAGACCTTAAAGATGCGATTTCTGTCACTTTCACTTCGCAACAATTTTTATCTCAATGAAATTTGACCAGAGAAATCACCAACCTTTCAGAGGTTCTTTCAGAAGTTATAAAGTTTAGTTTTTCTCTggtataattcatttattaaagaagtaaAAAGCTTGGAGTTATGTTAACATGTCACGTTAACATGCATAATGTGTAAGATGGCTATAAGTGTAATGcatttacattaataattataacaacaatGTCCAACGTTCATATCCTGTCCACACTAATACTGATGTAGCATCCAATGCTTAATAgggatagctagctagctagcatgttgATCAAAGAAAACGTCtggtaatgttagctaagtagCTAGATTAACTTGTTACAAGTTACAATGAACGTTTATTTGATACATAATCATTAGCTAGAGTATCAGTTGACGTTCACAGTTTCGTTGGATGtaatttaaaatctaaacatcTTTAATACGTGTTAACGTTTGACTGAAACAAATAACATTTCTGTCCAAAATACTGAAGATGTGTTAGGGGAAGTGGATAAGAACGCTAAAATTAAACAGTGCTAGGATGAAGGAGcgtgtatgtttatgtatgtggagacaaaaacaagatgtaaaaaagttattaaaaaaataaaaatagtttttacaTCATATACGTAGATCAGCAATTTTAGTACATACAAAACACAAACGAAATGCGAGTGTGCGATTAACAACGAACACGTTACGACTTCGTGTCATTCAGTTATAATGTGAAATAGTTTAGTGAGTGATCTGAAGTAAAAACGTAGAGcaggaaggaacacacacacacacacacacacaataacgaCGTAATGCTTCTGCCGCAAGTTGACATAAAGATTATGGTTCGCTGCACTGtgtctttaaaacaaaacaaacaatcaaaaaaaagAGGTCAAGAAGGAAATGAGTGCAAATGAAATCAGCGacgtggtgtttgtgttgttgttgttgttgttgttgttgtcagtATGAATAATGAATTCATTTCTAGCAAAAGAAAAACGACACAAAGGATCGAAATCTAGCTATCTGGCTCAGAAACGTTGAACCAGATCTCAGATTAAAGATTTAATCACATGATCTGAGGATGAGGAGCATCCAGGATTCGCAaagatgcttaaaaaaaacctccattgttttgttttgttgttacgGACCACGGAATCGCAGCTGTTCACTGAATCGGGATCAGGTTCAAGCGCTACATCGTTTTCCCAAcgtttatgttttataaaaaagCTCATTAAGCTCCTTGTGAAAATCCTGGTCCGTGTCTGAATCCGTTTTCCGGTCGCTTTATCGGATAATTTTCCTCCAGGACCCCGtggaaaaatgataaattattataaaattacattaaaaacgTTGCTttgtccaatcacagagcaaCAGTTAGTAACAGATAGTTAGCTGAGAGCAAACTAGTAAAACGAGAGAAGAACGATTGTTACGTCACGTATAGTTGGTAACGTCAGTTCCTGGGTCTCGTTCTTCGTATGTGGTGAGTTAGCTGGATTCACCACGTTGACCACGAATTGATATTCGTATTTTACGAAGCGAGCTTAGTCAATAAGCCTGGCTCGTCAATTTGctcagttactatagaaacacctTCTCCGTATCAAGCTAACGTTGAATTCCTTTTTTTCATGCTTATTTCCTTTGTAGGATTTTATGAGCAATTCACGTGTGCTGTTTCACTCACTCGAGTAGCTAAATCTTACGCAATTTCTTAACGCTGATTACGTATCCCGTagtgcaagaaaaaaagaaaaaccttccCCAGGCTTCCGTACTATCCTCATTAATACGTGTATAAATAAgagtaaaacatttgtttatagttacatcgtGATGGTCTGACTTGATGCTCTGTGATTGGACGAAGCCGCACACGctcattaaatattcatgaatttttattccttttccaGCTCGAGCTAAGACAATcataaaatatcacttttgAGTCACTTTATAGTGAATAAAAACGCAGATCTCAGACAACAAACCCGTGCTGTTTTCTGACGAGGTTAAgcgaaagaagaacaaaagattaaagaattaaaattgATCATTCTTCTCAGGggcataaaatatatttatgtatccGCAATATATAAATAACGTGAGTGGTATTTCGAATAAACGGGGGATCCGTTACTTCACATTTATCCTTAAACGATTACGTTTTGTAAGCAAGCGATACGAAAAGTGAAACGGAACGACGGACACAACGTACCGATAAAGAAAAAATTTCCACTTGGACACAACggaaaaaagtttcttttagAAACCGAAGATTGCTCTTTTTCATCTcatattaactgtttttttctctctcagaggtagaataaagaattaaaagtGAACAATAAGGGTCTGCGATAATGATTTGTTCTGTCACTAAATATCCAACCAAACTCTCAGAGACGAGTGAAAAACATTagcacattttttctttcttcttttttttgtttctttttttattccaaatGTTCTGCAGTAGtaagagagagatagtgagatgTTGTGATGGTGTGTAGAGAGTAGCGTATTGTCgtgtcatgtttgtgtgtgtgtgtgtcgtgtgtgttaATTTTAGTTAGACGTATCAGACTGAACACTTCCAGGTCCTTCTGTAGGTGAAGTTACGGACGATGGAGTCGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU382809 lncRNA upstream 186767 19660616 ~ 19661232 (+) True G323249
TU382800 lncRNA upstream 203429 19643823 ~ 19644570 (+) True G323240
TU382760 lncRNA upstream 264676 19582317 ~ 19583323 (+) True G323206
TU382711 lncRNA upstream 324966 19512724 ~ 19523033 (+) False G323168
TU382712 lncRNA upstream 324966 19512724 ~ 19523033 (+) True G323168
TU383072 lncRNA downstream 215238 20129253 ~ 20186501 (+) False clcn2a
TU383073 lncRNA downstream 215238 20129253 ~ 20243398 (+) False clcn2a
TU383098 lncRNA downstream 328603 20242618 ~ 20303253 (+) True G323471
TU383113 lncRNA downstream 353696 20267711 ~ 20335698 (+) True G323485
TU383131 lncRNA downstream 404942 20318957 ~ 20393150 (+) True G323499
XM_026946140.2 mRNA upstream 486738 19356412 ~ 19361261 (+) True ptger4c
XM_026946130.2 mRNA upstream 531793 19313860 ~ 19316206 (+) True LOC113546339
XM_026946329.2 mRNA upstream 550736 19284612 ~ 19297263 (+) False dmbx1a
XM_034314617.1 mRNA upstream 550736 19284612 ~ 19297263 (+) True dmbx1a
XM_026946342.2 mRNA upstream 627770 19204658 ~ 19220229 (+) True gng12a
XM_026946175.2 mRNA downstream 143572 20057587 ~ 20062476 (+) True glula
XM_034314586.1 mRNA downstream 224929 20138944 ~ 20150410 (+) True elovl1a
XM_026946357.2 mRNA downstream 224930 20138945 ~ 20150229 (+) False elovl1a
XM_034314582.1 mRNA downstream 243303 20157318 ~ 20180634 (+) False cc2d1b
XM_034314584.1 mRNA downstream 243964 20157979 ~ 20180634 (+) True cc2d1b
XR_004580282.1 other upstream 976639 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 1425368 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 1620766 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 1620863 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 2216391 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 524687 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 723569 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 1001389 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 1107174 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 1221104 21135119 ~ 21136847 (+) False G323615

Expression Profile