Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU383114 |
| length | 649 |
| lncRNA type | inter_gene |
| GC content | 0.31 |
| exon number | 2 |
| gene id | G323486 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 20332605 ~ 20353169 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU383098 | lncRNA | upstream | 29352 | 20242618 ~ 20303253 (+) | True | G323471 |
| TU383073 | lncRNA | upstream | 89207 | 20129253 ~ 20243398 (+) | False | clcn2a |
| TU383072 | lncRNA | upstream | 146104 | 20129253 ~ 20186501 (+) | False | clcn2a |
| TU382947 | lncRNA | upstream | 418590 | 19847999 ~ 19914015 (+) | True | G323358 |
| TU382809 | lncRNA | upstream | 671373 | 19660616 ~ 19661232 (+) | True | G323249 |
| TU383134 | lncRNA | downstream | 6798 | 20359967 ~ 20393712 (+) | True | G323500 |
| TU383137 | lncRNA | downstream | 9132 | 20362301 ~ 20395689 (+) | True | G323502 |
| TU383135 | lncRNA | downstream | 23764 | 20376933 ~ 20398720 (+) | True | G323501 |
| TU383141 | lncRNA | downstream | 27028 | 20380197 ~ 20405422 (+) | True | G323504 |
| TU383143 | lncRNA | downstream | 31335 | 20384504 ~ 20405422 (+) | False | G323504 |
| XM_034314809.1 | mRNA | upstream | 51538 | 20238226 ~ 20281067 (+) | False | clcn2a |
| XM_034314811.1 | mRNA | upstream | 51538 | 20243317 ~ 20281067 (+) | True | clcn2a |
| XM_034314812.1 | mRNA | upstream | 51538 | 20256343 ~ 20281067 (+) | False | clcn2a |
| XM_034314581.1 | mRNA | upstream | 151971 | 20157979 ~ 20180634 (+) | False | cc2d1b |
| XM_034297730.1 | mRNA | downstream | 116356 | 20469525 ~ 20476964 (+) | True | zgc:110269 |
| XM_034297731.1 | mRNA | downstream | 152515 | 20505684 ~ 20525922 (+) | True | lifra |
| XM_034297732.1 | mRNA | downstream | 178831 | 20532000 ~ 20572338 (+) | True | spef2 |
| XM_034297733.1 | mRNA | downstream | 219393 | 20572562 ~ 20589458 (+) | True | atr |
| XM_026911357.2 | mRNA | downstream | 239697 | 20592866 ~ 20602531 (+) | True | amer3 |
| XR_004580282.1 | other | upstream | 1461245 | 18816009 ~ 18871360 (+) | True | slc44a5a |
| TU381842 | other | upstream | 1909974 | 18415817 ~ 18422631 (+) | False | pex5lb |
| TU381774 | other | upstream | 2105372 | 18226562 ~ 18227233 (+) | False | si:ch211-162e15.3 |
| TU381775 | other | upstream | 2105469 | 18226562 ~ 18227136 (+) | False | si:ch211-162e15.3 |
| XR_003404718.2 | other | upstream | 2700997 | 17570649 ~ 17631608 (+) | False | egfra |
| TU383181 | other | downstream | 85533 | 20438702 ~ 20440561 (+) | True | G323534 |
| XR_004580310.1 | other | downstream | 284415 | 20637584 ~ 20659411 (+) | False | arhgef4 |
| trnap-ugg_22 | other | downstream | 562235 | 20915404 ~ 20915475 (+) | True | trnap-ugg_22 |
| TU383298 | other | downstream | 668020 | 21021189 ~ 21136847 (+) | True | G323615 |
| TU383295 | other | downstream | 781950 | 21135119 ~ 21136847 (+) | False | G323615 |
