RNA id: TU383134


Basic Information

Item Value
RNA id TU383134
length 397
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G323500
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20359967 ~ 20393712 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaacaacaaaagccAAAgtgcagaaagagaaaggaaaaccCTATACCTGATGCTGGATGGTGTAGCAGATGAactgtgtttggtgtttgtacTCACCTGCTGATCCTTGAGGAACGACACCACGTCATCACGTTTCCCTCTATGAGTGACGACGGCGTGAGCTGGAACTTTGGCTAAATGACACCTCTTATACTCAGTAATTTCAGCAGAGCCCCCAGGACAGATGAGCTTGAACTTTGGCTAAATGACACCTCTTATACTCAGTAATTTCAGCAGAGCCCCCAGGACAGATGAGCTTGAAGTCTGATGATTTGAAAGCTTTAGCCCACGCTGGTCCATTACCTGGAGAGAGATGCAGAATTCTTCATGAATATAAAGCTGAGGACGTTTACTAAT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383114 lncRNA upstream 6798 20332605 ~ 20353169 (+) True G323486
TU383113 lncRNA upstream 24269 20267711 ~ 20335698 (+) True G323485
TU383098 lncRNA upstream 56714 20242618 ~ 20303253 (+) True G323471
TU383073 lncRNA upstream 116569 20129253 ~ 20243398 (+) False clcn2a
TU383072 lncRNA upstream 173466 20129253 ~ 20186501 (+) False clcn2a
TU383145 lncRNA downstream 6774 20400486 ~ 20417484 (+) False G323504
TU383166 lncRNA downstream 23860 20417572 ~ 20442370 (+) True G323524
TU383140 lncRNA downstream 40767 20434479 ~ 20449327 (+) True G323503
TU383184 lncRNA downstream 56261 20449973 ~ 20450892 (+) True G323536
XR_004580291.1 lncRNA downstream 83260 20476972 ~ 20478345 (+) True LOC117599946
XM_034314809.1 mRNA upstream 78900 20238226 ~ 20281067 (+) False clcn2a
XM_034314811.1 mRNA upstream 78900 20243317 ~ 20281067 (+) True clcn2a
XM_034314812.1 mRNA upstream 78900 20256343 ~ 20281067 (+) False clcn2a
XM_034314581.1 mRNA upstream 179333 20157979 ~ 20180634 (+) False cc2d1b
XM_034297730.1 mRNA downstream 75813 20469525 ~ 20476964 (+) True zgc:110269
XM_034297731.1 mRNA downstream 111972 20505684 ~ 20525922 (+) True lifra
XM_034297732.1 mRNA downstream 138288 20532000 ~ 20572338 (+) True spef2
XM_034297733.1 mRNA downstream 178850 20572562 ~ 20589458 (+) True atr
XM_026911357.2 mRNA downstream 199154 20592866 ~ 20602531 (+) True amer3
XR_004580282.1 other upstream 1488607 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 1937336 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2132734 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 2132831 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 2728359 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 44990 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 243872 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 521692 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 627477 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 741407 21135119 ~ 21136847 (+) False G323615

Expression Profile