RNA id: TU383135


Basic Information

Item Value
RNA id TU383135
length 510
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G323501
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20376933 ~ 20398720 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCACCAGACCACACTTTCCAGCAATATACACTTCTCCTCCATCAACTGCAATAGCATCAGCCTGAGTAAGctgcacacacaaagaaaaagttCAGAAATGAGAAACACAAAATGGAAATGACAAATACAACGCCTTGACTCTGTGCCACTCGTCACACTCGTTATCTCTTTACCAAGATCTTCTTGATGCAATCCTGCACCGTGCTGGCAGATTCACATTCCAGTCTGCTGTTGCCTTCATCGTCAGTGTTGACAAAGCTCCATGCGTCACATTTCCTGCTCTGAGCTTTACCCACGGTGCACCATTTAATCTTGTCGAAGATCTTCTTGATGCAATCCTGCACCGTGCCGGCAGATTCACATTCCAGTCTGCTGTTCCCTTCATCGTCAGTGTTGACAAAGCTCCATGCGTCACATTTCCTGCTCTGAGCTTTACCCACGGTGCACCATTTAATCTTGTCGGACGACGGACTGGCTGTGCTTTCTGGAGAGAAAAATAGATTAATTG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383114 lncRNA upstream 23764 20332605 ~ 20353169 (+) True G323486
TU383113 lncRNA upstream 41235 20267711 ~ 20335698 (+) True G323485
TU383098 lncRNA upstream 73680 20242618 ~ 20303253 (+) True G323471
TU383073 lncRNA upstream 133535 20129253 ~ 20243398 (+) False clcn2a
TU383072 lncRNA upstream 190432 20129253 ~ 20186501 (+) False clcn2a
TU383145 lncRNA downstream 1766 20400486 ~ 20417484 (+) False G323504
TU383166 lncRNA downstream 18852 20417572 ~ 20442370 (+) True G323524
TU383140 lncRNA downstream 35759 20434479 ~ 20449327 (+) True G323503
TU383184 lncRNA downstream 51253 20449973 ~ 20450892 (+) True G323536
XR_004580291.1 lncRNA downstream 78252 20476972 ~ 20478345 (+) True LOC117599946
XM_034314809.1 mRNA upstream 95866 20238226 ~ 20281067 (+) False clcn2a
XM_034314811.1 mRNA upstream 95866 20243317 ~ 20281067 (+) True clcn2a
XM_034314812.1 mRNA upstream 95866 20256343 ~ 20281067 (+) False clcn2a
XM_034314581.1 mRNA upstream 196299 20157979 ~ 20180634 (+) False cc2d1b
XM_034297730.1 mRNA downstream 70805 20469525 ~ 20476964 (+) True zgc:110269
XM_034297731.1 mRNA downstream 106964 20505684 ~ 20525922 (+) True lifra
XM_034297732.1 mRNA downstream 133280 20532000 ~ 20572338 (+) True spef2
XM_034297733.1 mRNA downstream 173842 20572562 ~ 20589458 (+) True atr
XM_026911357.2 mRNA downstream 194146 20592866 ~ 20602531 (+) True amer3
XR_004580282.1 other upstream 1505573 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 1954302 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2149700 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 2149797 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 2745325 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 39982 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 238864 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 516684 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 622469 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 736399 21135119 ~ 21136847 (+) False G323615

Expression Profile