RNA id: TU383140


Basic Information

Item Value
RNA id TU383140
length 2978
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G323503
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20434479 ~ 20449327 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccaGCATGTGCAGTAAAAATGCCTGGAGCCTGTACGAACATTTTTCAAAttaagtttattgtcatttatattacattcatCTCAAAACAGTCAACCAAGCAGTTGtgaaacataattaaaaaaataataatactaataaaataaaaggggAGAAACAGCACACTGAAACAGTTAGTAATTAGAACCGATGTTTTCTGAGTTTTACGCAGTTTTACGCTGATTTACGGAAAAATCTGCCGAAACTCCGTCGCCACTTTGTTCCCATCGTCTCGCTTCAGCTCACACTCCTCCGCTGTCTTCATCTCTTCATCTTTTATTCCTACACGTCTGTTAGGAAATTAAACTGTAgaatgtgtgtgatattttctCCGCTGTATCGGACGTCACGTTTTTAAAGCTACAatcagtgtgttgttttttttttaaacatctaatCTACACTGTAACTGACTAAACActtcttatttcatttttatgcaccgattttatttcattactgatgtacagtatatctacCCTAAAGCCTAGAGCGAAAaggcaaaaatataataataacaataacaataataataataataataataataatgaacgaGGTGGGAGATATGATATCGATATCGCGATAAGTTTTATACGTATCGTGAAATgtcagtttccttttttttcttaattgctggtcacattttccttctttcgtcaattaaattaaatgtttgttgtttataatattgttgttttttttattagtgatAAATATCGTGATATGTATATCTATAGCGAGAGAATATactcgtttctgattggctgacttGAGTCTCCGTTATgttatgtactttttttttaacgcaAATAAGTTCGTAACGTTTTCCGACAGTGTCCCAGTTTCACGAGTTGTGACGTGACGTCGTATCTCAGCGTGGAGAAATCCATGGAGGTTGAGTCAGCGGTTAACGCGAAGCGTAAATCATGTCGTAATTTTAATCGTACTGAGCGTTTTCTTACTAATCTGTCTTGTTTTAAAGCTGTGCTAGCTACATCACTAATCAGCCTTATTCATTAGCTATTTGCGAGCTGgactgtaaccatgacaacgagCACATACAGTGGCAATGCAATAAACTATTAAACGAATCATTAGTATTAATTACATGTGACGAGAACAGCGTGAGAgatgtaaccatggcaacaatcACATAATGGCGGTGGACTAGAACGCTAACGCTACATATAATGACGTATAAATCAAAAAACTTTGTGACGTCACAAAATATCTGCCATAATCTGTTTTACAGCTTTTACGTTACTGATTGTAGCTTTAAAACGTCGTCATTAAAACGTCACTCGGAGCCGGAAAACGCAGCTTTATAGACGTTTTTACAGAACGAAATGAAACAGAATCAAACCTTTAAGACTcttcataaataaatagcagAGATGAATGAACTTTGCCAAATTCATTCCGGTGCAAAGgctgtactttttattttattttttttaaagcggtACTATGCAATTCTGCAGCTATAGTGTTTAACGCAGGATCGAACGCacgataaaacacacacacaccttaaaaaaaaaaaaaaaacagcgaaaTCTcgtttttaaaccattttattttaaacataaaaacttCACTAAAGGCACTTTATCTTTTGCACTTTGTCTCTTCGAAAGAGACGAGAAACGCGTGACGGTTTTTATactgatttttacatttatttagtttttaaggcgagaaaaaaacaaaacaaaaaacagtgactGAAGTTCCTCTGCGTTTTAAGACTAAGTCAGTTAGTCAGTTAgtcagttagttagttagttagcgaTTAGTTGtcaggaacaaaaacaaaactggagGATGAAGTaggaataaaaatgaacacGATGACGCCATTTTGctcgtcatcatcatcgtttCGAGATATTTTTGCAAAGcgaatttcattaaaatggagggaaaaaaacgtATTAAACCATATTACGTCTTATTttgatcttttctttctttaaacaaaatctGGAGATTGACCTTTCGACgcaagtgggcggggcttatttcATTCCTACACGCCGACATACGACTTTACAGGCAGCGTCTGCTCGGGTTTTGTAGCTACGATACACTACGATaatcacttctctctttaaaACAGCAACGTTTAAAGCGAactgtgttttaataataataaaaaataaatgataataaatcgTAATAAAGAGGCTCAGAAATATTAGCTCCTGATGATGTGAATGTTTCTGTCtataaaagatgtttatttcagaTTGAATATTTTCGTATAAAAATATAGATCATTTGTACAGGAACGATAAAAATTCTCAGGTTTGAATAAACGAGTAAATTAATGCAGCTTGAGAGATTTTAGTGTCGGAACACGGCAGTAAGTAAGGCACGATACGATCATAAATCAGATCAGATTATAAattcacagaaatatatatattctaacagaaaaaaataaaacatttaatttattgtcTCTCCGTGTGGCGATTAATCGTCTTTCTAAACCGCATCAAATCCCAAAACTGCTCCAGAGACGCGAGAAGCGACGATCATTCGCTATGAatgcaaatttaaatttaaatttttaattaattgataatCATCTTTTGACTAGAAAATATCACCTTCATGCAtacggattaaaaaaatgatttaaaaaaaggacagaaataGATTTGAGTAAAATGTAGtgactattattttattttgataaataaaaaaatgattaaatttaaaaactgcAGGTTTAATAAAAgatgaggctttttttttttaaatcaaacatgaCCTTTAAGATACaaagtggaataaaaatatattcctaaaaaaaatatattctgttgataaaaaaatgaattaattccaaagaatattaatgaattactTTATTGGGCCTCACTGATCGAGCTGGATACGAacggatttattcataaatgcgTAAATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383145 lncRNA upstream 16995 20400486 ~ 20417484 (+) False G323504
TU383141 lncRNA upstream 29057 20380197 ~ 20405422 (+) True G323504
TU383143 lncRNA upstream 29057 20384504 ~ 20405422 (+) False G323504
TU383135 lncRNA upstream 35759 20376933 ~ 20398720 (+) True G323501
TU383137 lncRNA upstream 38790 20362301 ~ 20395689 (+) True G323502
TU383184 lncRNA downstream 646 20449973 ~ 20450892 (+) True G323536
XR_004580291.1 lncRNA downstream 27645 20476972 ~ 20478345 (+) True LOC117599946
TU383194 lncRNA downstream 27669 20476996 ~ 20478345 (+) False LOC117599946
TU383195 lncRNA downstream 27669 20476996 ~ 20478274 (+) False LOC117599946
TU383205 lncRNA downstream 79178 20528505 ~ 20604192 (+) True G323553
XM_034314809.1 mRNA upstream 153412 20238226 ~ 20281067 (+) False clcn2a
XM_034314811.1 mRNA upstream 153412 20243317 ~ 20281067 (+) True clcn2a
XM_034314812.1 mRNA upstream 153412 20256343 ~ 20281067 (+) False clcn2a
XM_034314581.1 mRNA upstream 253845 20157979 ~ 20180634 (+) False cc2d1b
XM_034297730.1 mRNA downstream 20198 20469525 ~ 20476964 (+) True zgc:110269
XM_034297731.1 mRNA downstream 56357 20505684 ~ 20525922 (+) True lifra
XM_034297732.1 mRNA downstream 82673 20532000 ~ 20572338 (+) True spef2
XM_034297733.1 mRNA downstream 123235 20572562 ~ 20589458 (+) True atr
XM_026911357.2 mRNA downstream 143539 20592866 ~ 20602531 (+) True amer3
XR_004580282.1 other upstream 1563119 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2011848 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2207246 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 2207343 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 2802871 17570649 ~ 17631608 (+) False egfra
XR_004580310.1 other downstream 188257 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 466077 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 571862 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 685792 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 692950 21142277 ~ 21142348 (+) True trnap-ugg_23

Expression Profile