RNA id: TU383141


Basic Information

Item Value
RNA id TU383141
length 2570
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G323504
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20380197 ~ 20417484 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGTAATTAGTTCAATCACAAACCTTTAGTTTGTCAAGAACCTCAGAGATACGGTCGGACAGGTCTTTGTCATAGCGACTGATGACAGCGTGACCAGGAACTCGGGCCAGGTGGCAGTTTTTATACTCATCAACAGGCTTCCTGGTGCCGTCCTTACACAGCAGCTCGTACTGGTCCTTTGCAGCTAATAAGAAATTACAAGCGTCTTAATACTTACTTCTTACTAACAGTAACTTTTTGCAGAATCCTTCCTTTACTTACCAAGTGCTGTGACATGCTTCACAAACGCCACATCTGCATCTCTTTCCTTCAGGCACCTGCAGGAACAGGAAAGGTTTGACACCATGTGAGTAGTTTATGGCCAAGAGGAATGTGTAGGGAAGCATAAAGATTCATTCAAATGAAAAGGAATGACAAACACCGATGtggtgaacttttctgtaaggagacgtttattcaacatttacggaaggagtctccagtgtcagcgctttgtaacagtcagaggtaaagctgtaacttgaagttttacgacgtcttcaggacagaggagtttacgcttctttgcggtttctcagtaacatgacgagctttgtgtgttttttgtttttgtcttattatagctgctataacgtaagtgttGTTTCATGGAcctttcacaacattaaatgtaactataaataaaaagttcaacgaactgaatataaaaaatttgaatcattggcaatttgctgttgtataagaggaatagaacacttcagaacatgctgcTATAAAAAAAGCATGGTAATAGCATTACATCAGCACtccgtggattattttcctttaacagcacgtccctttgtgttttatttcttatttattggTTAGGTGACTTTCAACTGCACAaagcacagtaaaaaaaaaaaaaacatgtactgaATAAAAGAGTGAATTAGCGTTGTTCAAGTACTAATGACATTTTAGTTTTGTGATATGATTTAGgtagattaaattaaaattacatttggGAGAAATACTGTCTGCACTGCACCATTAAATAATGACTCCTGTCTCTCAACACCCACAACATCGGACATGTTTCTGCAGCTCCAGGCTGATCTACAAGGCTCTCAGGATAGTTTTGTTTGTACGCTACATTTCTGTTCACACAGAAAACAGACTTAACTGAAAAGCaaacagagggagagtgagGTTCTTACAGGAAAGCTCCATCGTAATCATAATACGGCTCCTCGTGAGAGCGCTGGCAGCCTCTTTTACACAACTGGCATAGCTTCTTGTTTGTCGCTCCTGGCACACAACTGGCTGAGAAGAATTCTGCCACCGCTGCAAAACAAAAacgcacacacataaacacacacacatacaacatgGGCTCCAtgtaagtccctgtgaaagagctgttactatagaaacaataacgtattagaacgagcgcattaattataaataaacctgtgatttgcggctgcactactgtcagagctgctgttctagaaaattaatcaacaccttctgaccatttAGTAGGCAGTGATTCATTTACGCACTccgtttgtgtttgtgtggaaacTGCTGAACAAAAGCTTGAAAAACTCTCTCACCGTCCTCCAGAGGTTTGTCATCGATGCCACCCCATTTAATTTGTCCCTGTTCGAGGAGAGTGCCGATGGGGATGTTCCAGCCCGCAGTTTTCCCCAAACCAGTGTGACAGGACTTCTTCTCACGAAGGTCCTTGAAGCCAAAGTTTGTGCCTTTCTTTACTACAGCAACAGCGTAGTAGCATGGCTCTCCTAGAACAAGTTCAAGATTACAGACTCAAGCTTAGTATTTTtatagtagtattattattattattattattattattattattattattattatagtagtagtagtattagtagcagtagtagtagtatagagAACAAACCAGCGTTAtgctttttttaacatttcattttcgGATTGGATTAGCGACTACCTGCGTAATGTTCTGCGATGATGGGGTGAAGGTTATGGGGTGCGAGGCCGGCTGTGTAGATATCTCCTCCATCCAGAGTGATGGCATCTGCTTCACCTTTCGCAATGGCTTTGATGCACTCCAGAGTTCCCGACTTCTTCACACAGCCTAGTGTTCCGAGCTTGTTGCATTTATCAAGCTCCTCTTGTGACTTTAAACACCATTTGACAGTTGCCTGGGGTGCAGCCTGCGCTAAGGCGAGGCAGGACAGGATGGCACAGACGACGGAGAGCTTCATGCTGGACTCCTGGATGCAGCAGACACTGTGTGTGACAGCAAGGGATCCTTTATAGGGAGCCTAGAGCTGAGGGGGCGGAGTTATGATCAAGCGGAGGTGTGGGCTTCATCACAAATCACTCTTTAGTCACTACATAACAGCACTAAATAGGGTGTGTAATATAATGATCTTCTAcactctgtgtagtgcactacatgttcAAGAGGAACATGAgggtttgtgatttttttttttggaaaattccaGGGAAAgtccatttttttattccatcttCTGGAAACACGTGACAATTTCACAGGGACGTT

Function

GO:

id name namespace
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383114 lncRNA upstream 27028 20332605 ~ 20353169 (+) True G323486
TU383113 lncRNA upstream 44499 20267711 ~ 20335698 (+) True G323485
TU383098 lncRNA upstream 76944 20242618 ~ 20303253 (+) True G323471
TU383073 lncRNA upstream 136799 20129253 ~ 20243398 (+) False clcn2a
TU383072 lncRNA upstream 193696 20129253 ~ 20186501 (+) False clcn2a
TU383166 lncRNA downstream 12150 20417572 ~ 20442370 (+) True G323524
TU383140 lncRNA downstream 29057 20434479 ~ 20449327 (+) True G323503
TU383184 lncRNA downstream 44551 20449973 ~ 20450892 (+) True G323536
XR_004580291.1 lncRNA downstream 71550 20476972 ~ 20478345 (+) True LOC117599946
TU383194 lncRNA downstream 71574 20476996 ~ 20478345 (+) False LOC117599946
XM_034314809.1 mRNA upstream 99130 20238226 ~ 20281067 (+) False clcn2a
XM_034314811.1 mRNA upstream 99130 20243317 ~ 20281067 (+) True clcn2a
XM_034314812.1 mRNA upstream 99130 20256343 ~ 20281067 (+) False clcn2a
XM_034314581.1 mRNA upstream 199563 20157979 ~ 20180634 (+) False cc2d1b
XM_034297730.1 mRNA downstream 64103 20469525 ~ 20476964 (+) True zgc:110269
XM_034297731.1 mRNA downstream 100262 20505684 ~ 20525922 (+) True lifra
XM_034297732.1 mRNA downstream 126578 20532000 ~ 20572338 (+) True spef2
XM_034297733.1 mRNA downstream 167140 20572562 ~ 20589458 (+) True atr
XM_026911357.2 mRNA downstream 187444 20592866 ~ 20602531 (+) True amer3
XR_004580282.1 other upstream 1508837 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 1957566 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2152964 18226562 ~ 18227233 (+) False si:ch211-162e15.3
TU381775 other upstream 2153061 18226562 ~ 18227136 (+) False si:ch211-162e15.3
XR_003404718.2 other upstream 2748589 17570649 ~ 17631608 (+) False egfra
TU383181 other downstream 33280 20438702 ~ 20440561 (+) True G323534
XR_004580310.1 other downstream 232162 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 509982 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 615767 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 729697 21135119 ~ 21136847 (+) False G323615

Expression Profile