RNA id: XR_004580291.1


Basic Information

Item Value
RNA id XR_004580291.1
length 397
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id LOC117599946
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20476972 ~ 20478345 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCacaggaggaaggagagagaggagaaaaaaaagggaggagGCAGACAGACGAGTCTGGACGAATTCTTTCGTGTGACACGGAAAAGACGGtctgcaGAAGCAGGAGGATCCACAGGCAGAAAGCAACCGAAGACTAAATGAtgctccttttatttatttattttttaaagctttaatgaCGGAGAGAAGTCGTCGATTATTTCAGTCTGATtcctgttttattgttttatttttattttatctgtaattATGTTGTACATTTAAGTGGCTTGAATTAGctgattattcattttttatgaaCAATGCGATCATGTAAAAGACACTACGTTTTAtaagtttattgttttttttatttccaaagcTTCGttcttaaaatacaatatttctgttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383184 lncRNA upstream 26080 20449973 ~ 20450892 (+) True G323536
TU383140 lncRNA upstream 27645 20434479 ~ 20449327 (+) True G323503
TU383166 lncRNA upstream 34602 20417572 ~ 20442370 (+) True G323524
TU383145 lncRNA upstream 59488 20400486 ~ 20417484 (+) False G323504
TU383141 lncRNA upstream 71550 20380197 ~ 20405422 (+) True G323504
TU383205 lncRNA downstream 50160 20528505 ~ 20604192 (+) True G323553
TU383236 lncRNA downstream 173888 20652233 ~ 20653361 (+) True G323574
TU383238 lncRNA downstream 191340 20669685 ~ 20670160 (+) True G323576
TU383242 lncRNA downstream 193383 20671728 ~ 20672454 (+) True G323577
TU383246 lncRNA downstream 194589 20672934 ~ 20705194 (+) True G323578
XM_034297730.1 mRNA upstream 8 20469525 ~ 20476964 (+) True zgc:110269
XM_034314809.1 mRNA upstream 195905 20238226 ~ 20281067 (+) False clcn2a
XM_034314811.1 mRNA upstream 195905 20243317 ~ 20281067 (+) True clcn2a
XM_034314812.1 mRNA upstream 195905 20256343 ~ 20281067 (+) False clcn2a
XM_034314581.1 mRNA upstream 296338 20157979 ~ 20180634 (+) False cc2d1b
XM_034297731.1 mRNA downstream 27339 20505684 ~ 20525922 (+) True lifra
XM_034297732.1 mRNA downstream 53655 20532000 ~ 20572338 (+) True spef2
XM_034297733.1 mRNA downstream 94217 20572562 ~ 20589458 (+) True atr
XM_026911357.2 mRNA downstream 114521 20592866 ~ 20602531 (+) True amer3
XM_034314646.1 mRNA downstream 159239 20637584 ~ 20663819 (+) True arhgef4
TU383181 other upstream 36411 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 1605612 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2054341 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2249739 18226562 ~ 18227233 (+) False si:ch211-162e15.3
XR_004580310.1 other downstream 159239 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 437059 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 542844 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 656774 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 663932 21142277 ~ 21142348 (+) True trnap-ugg_23

Expression Profile