RNA id: TU383205


Basic Information

Item Value
RNA id TU383205
length 333
lncRNA type read_through
GC content 0.45
exon number 2
gene id G323553
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20528505 ~ 20604192 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggggatagggtgtagggagtaggggatagggtgtagggagtagggtgtaggggagtagggatagggtgtagggagtagggtgtagggagtagggagctgTGTGGGATTCAGCGCATAATGACACTAAAACTGTTTGTGAGTAAAATCAGCTACAGATATTGctactgttatatgaaaatgtataaatattaaatttaacagATGTTATAATCCATCACTAACACTGtggcctgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580291.1 lncRNA upstream 50160 20476972 ~ 20478345 (+) True LOC117599946
TU383194 lncRNA upstream 50160 20476996 ~ 20478345 (+) False LOC117599946
TU383195 lncRNA upstream 50231 20476996 ~ 20478274 (+) False LOC117599946
TU383184 lncRNA upstream 77613 20449973 ~ 20450892 (+) True G323536
TU383140 lncRNA upstream 79178 20434479 ~ 20449327 (+) True G323503
TU383236 lncRNA downstream 48041 20652233 ~ 20653361 (+) True G323574
TU383238 lncRNA downstream 65493 20669685 ~ 20670160 (+) True G323576
TU383242 lncRNA downstream 67536 20671728 ~ 20672454 (+) True G323577
TU383246 lncRNA downstream 68742 20672934 ~ 20705194 (+) True G323578
TU383279 lncRNA downstream 329040 20933232 ~ 20946079 (+) True G323603
XM_034297731.1 mRNA upstream 2583 20505684 ~ 20525922 (+) True lifra
XM_034297730.1 mRNA upstream 51541 20469525 ~ 20476964 (+) True zgc:110269
XM_034314809.1 mRNA upstream 247438 20238226 ~ 20281067 (+) False clcn2a
XM_034314811.1 mRNA upstream 247438 20243317 ~ 20281067 (+) True clcn2a
XM_034314812.1 mRNA upstream 247438 20256343 ~ 20281067 (+) False clcn2a
XM_034314646.1 mRNA downstream 33392 20637584 ~ 20663819 (+) True arhgef4
XM_034314645.1 mRNA downstream 33392 20637584 ~ 20662857 (+) False arhgef4
XM_034314647.1 mRNA downstream 39880 20644072 ~ 20662857 (+) False arhgef4
XM_034297735.1 mRNA downstream 203435 20807627 ~ 20883606 (+) True col11a1b
XM_026911369.2 mRNA downstream 282068 20886260 ~ 20892997 (+) True tecrl2b
TU383181 other upstream 87944 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 1657145 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2105874 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2301272 18226562 ~ 18227233 (+) False si:ch211-162e15.3
XR_004580310.1 other downstream 33392 20637584 ~ 20659411 (+) False arhgef4
trnap-ugg_22 other downstream 311212 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 416997 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 530927 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 538085 21142277 ~ 21142348 (+) True trnap-ugg_23

Expression Profile