RNA id: TU383238


Basic Information

Item Value
RNA id TU383238
length 450
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G323576
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20669685 ~ 20670160 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTGAAAATACACTTCAAACATCAGCGAAggtattgaagaaaaactgtttcagacatttgaccttgctctGACCTTCATCCTGTTTGGATCGAttccaaaatgtaatcagttcatCCGCTGGTTATGATGATAATtacatataaatcctacaaaCGCACTAACGAGAATCTCGGACGGACGGACGACCGGAAAACACGACTCCTCCATCGCCTCCAGGAGTGAAGAACATACTGagctttctgggtgggaggggcatactctctctcacctgtcaatcacagagacaccagccaatcatgggcatctgtgagctcatgtatgtagaagagggtagatagcgcttgaCAGGATATGGCCGTCGAATGACAGGAGAGAAGTGACAGATGACCAAACTGGGAAGAAAACAGGAGAActgatgtgtgttttcttttcatggATTTTCTTCTCC

Function

GO:

id name namespace
GO:0040007 growth biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383236 lncRNA upstream 16324 20652233 ~ 20653361 (+) True G323574
TU383205 lncRNA upstream 65493 20528505 ~ 20604192 (+) True G323553
XR_004580291.1 lncRNA upstream 191340 20476972 ~ 20478345 (+) True LOC117599946
TU383194 lncRNA upstream 191340 20476996 ~ 20478345 (+) False LOC117599946
TU383195 lncRNA upstream 191411 20476996 ~ 20478274 (+) False LOC117599946
TU383242 lncRNA downstream 1568 20671728 ~ 20672454 (+) True G323577
TU383246 lncRNA downstream 2774 20672934 ~ 20705194 (+) True G323578
TU383279 lncRNA downstream 263072 20933232 ~ 20946079 (+) True G323603
TU383316 lncRNA downstream 297353 20967513 ~ 21024078 (+) True G323624
TU383301 lncRNA downstream 351029 21021189 ~ 21136847 (+) False G323615
XM_034314646.1 mRNA upstream 5866 20637584 ~ 20663819 (+) True arhgef4
XM_034314645.1 mRNA upstream 6828 20637584 ~ 20662857 (+) False arhgef4
XM_034314647.1 mRNA upstream 6828 20644072 ~ 20662857 (+) False arhgef4
XM_026911357.2 mRNA upstream 67154 20592866 ~ 20602531 (+) True amer3
XM_034297733.1 mRNA upstream 80227 20572562 ~ 20589458 (+) True atr
XM_034297735.1 mRNA downstream 137467 20807627 ~ 20883606 (+) True col11a1b
XM_026911369.2 mRNA downstream 216100 20886260 ~ 20892997 (+) True tecrl2b
XM_034314548.1 mRNA downstream 310589 20980749 ~ 20991604 (+) True LOC113524959
XM_034314550.1 mRNA downstream 310589 20980749 ~ 20991604 (+) False LOC113524959
XM_034314549.1 mRNA downstream 310589 20980749 ~ 20991602 (+) False LOC113524959
XR_004580310.1 other upstream 10274 20637584 ~ 20659411 (+) False arhgef4
TU383181 other upstream 229124 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 1798325 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2247054 18415817 ~ 18422631 (+) False pex5lb
TU381774 other upstream 2442452 18226562 ~ 18227233 (+) False si:ch211-162e15.3
trnap-ugg_22 other downstream 245244 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 351029 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 464959 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 472117 21142277 ~ 21142348 (+) True trnap-ugg_23
trnai-aau_18 other downstream 476790 21146950 ~ 21147023 (+) True trnai-aau_18

Expression Profile