RNA id: TU383246


Basic Information

Item Value
RNA id TU383246
length 386
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G323578
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20672934 ~ 20705194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACAGGTTCAGGAAATTCCAGTGCTGAATATTAACTAACATTCAGTAAAGCTTTTACAGTGtgattaatatttctgtttattatttctctataacacatctgtcaaacacacacacacacacacacacacacacaccactgacagGAGTagagtttaattaattaattatactcGATCACACCACATTAAAGACATTCTAATGATTCATCaaatatctgtttattaatTCAAACACattcaataattaataaattagacagaaggcactgtgtgtttatagtaacaggaaaacaaataaatcaacacacacacagtgagagaaacagacagacaggtgtgtgtgtgtgtgtgtgtgtgtgggtgtgggtgagtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383242 lncRNA upstream 480 20671728 ~ 20672454 (+) True G323577
TU383238 lncRNA upstream 2774 20669685 ~ 20670160 (+) True G323576
TU383236 lncRNA upstream 19573 20652233 ~ 20653361 (+) True G323574
TU383205 lncRNA upstream 68742 20528505 ~ 20604192 (+) True G323553
TU383194 lncRNA upstream 194589 20476996 ~ 20478345 (+) False LOC117599946
TU383279 lncRNA downstream 228038 20933232 ~ 20946079 (+) True G323603
TU383316 lncRNA downstream 262319 20967513 ~ 21024078 (+) True G323624
TU383301 lncRNA downstream 315995 21021189 ~ 21136847 (+) False G323615
TU383302 lncRNA downstream 315995 21021189 ~ 21157280 (+) False G323615
XR_004580335.1 lncRNA downstream 318978 21024172 ~ 21024556 (+) True LOC117599988
XM_034314646.1 mRNA upstream 9115 20637584 ~ 20663819 (+) True arhgef4
XM_034314645.1 mRNA upstream 10077 20637584 ~ 20662857 (+) False arhgef4
XM_034314647.1 mRNA upstream 10077 20644072 ~ 20662857 (+) False arhgef4
XM_026911357.2 mRNA upstream 70403 20592866 ~ 20602531 (+) True amer3
XM_034297733.1 mRNA upstream 83476 20572562 ~ 20589458 (+) True atr
XM_034297735.1 mRNA downstream 102433 20807627 ~ 20883606 (+) True col11a1b
XM_026911369.2 mRNA downstream 181066 20886260 ~ 20892997 (+) True tecrl2b
XM_034314548.1 mRNA downstream 275555 20980749 ~ 20991604 (+) True LOC113524959
XM_034314550.1 mRNA downstream 275555 20980749 ~ 20991604 (+) False LOC113524959
XM_034314549.1 mRNA downstream 275555 20980749 ~ 20991602 (+) False LOC113524959
XR_004580310.1 other upstream 13523 20637584 ~ 20659411 (+) False arhgef4
TU383181 other upstream 232373 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 1801574 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2250303 18415817 ~ 18422631 (+) False pex5lb
TU381775 other upstream 2445798 18226562 ~ 18227136 (+) False si:ch211-162e15.3
trnap-ugg_22 other downstream 210210 20915404 ~ 20915475 (+) True trnap-ugg_22
TU383298 other downstream 315995 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 429925 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 437083 21142277 ~ 21142348 (+) True trnap-ugg_23
trnai-aau_18 other downstream 441756 21146950 ~ 21147023 (+) True trnai-aau_18

Expression Profile