RNA id: TU383279


Basic Information

Item Value
RNA id TU383279
length 342
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G323603
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20933232 ~ 20946079 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAACTCCTCCTTCTGACGAACtcgtttgggacacagccgcAGCTCAGGGTTTGTGGCTCGGGTGCAGGTGAGTCTTTCAGGTCgttaaggagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagacagtctgATCTAAGCCAGTCTGATCTAAGCCAGTGTGAGTAACAGGAAGTTAATGTGCACGACACACACCTCACGTCAACGCACACTGATTGTTCTGATCTGTATCATAAGCGCTTGTTgcagggggcgtggccatgCTTGAGCAtcagtaggtcacatgatcGTAAGCTCTGTAATGTGTATCCACGTGTCTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383246 lncRNA upstream 228038 20672934 ~ 20705194 (+) True G323578
TU383242 lncRNA upstream 260778 20671728 ~ 20672454 (+) True G323577
TU383238 lncRNA upstream 263072 20669685 ~ 20670160 (+) True G323576
TU383236 lncRNA upstream 279871 20652233 ~ 20653361 (+) True G323574
TU383205 lncRNA upstream 329040 20528505 ~ 20604192 (+) True G323553
TU383316 lncRNA downstream 21434 20967513 ~ 21024078 (+) True G323624
TU383301 lncRNA downstream 75110 21021189 ~ 21136847 (+) False G323615
TU383302 lncRNA downstream 75110 21021189 ~ 21157280 (+) False G323615
XR_004580335.1 lncRNA downstream 78093 21024172 ~ 21024556 (+) True LOC117599988
TU383317 lncRNA downstream 80342 21026421 ~ 21037720 (+) True G323625
XM_026911369.2 mRNA upstream 40235 20886260 ~ 20892997 (+) True tecrl2b
XM_034297735.1 mRNA upstream 49626 20807627 ~ 20883606 (+) True col11a1b
XM_034314646.1 mRNA upstream 269413 20637584 ~ 20663819 (+) True arhgef4
XM_034314645.1 mRNA upstream 270375 20637584 ~ 20662857 (+) False arhgef4
XM_034314647.1 mRNA upstream 270375 20644072 ~ 20662857 (+) False arhgef4
XM_034314548.1 mRNA downstream 34670 20980749 ~ 20991604 (+) True LOC113524959
XM_034314550.1 mRNA downstream 34670 20980749 ~ 20991604 (+) False LOC113524959
XM_034314549.1 mRNA downstream 34670 20980749 ~ 20991602 (+) False LOC113524959
XM_034297793.1 mRNA downstream 179794 21125873 ~ 21127829 (+) True LOC117595742
trnap-ugg_22 other upstream 17757 20915404 ~ 20915475 (+) True trnap-ugg_22
XR_004580310.1 other upstream 273821 20637584 ~ 20659411 (+) False arhgef4
TU383181 other upstream 492671 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 2061872 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2510601 18415817 ~ 18422631 (+) False pex5lb
TU383298 other downstream 75110 21021189 ~ 21136847 (+) True G323615
TU383295 other downstream 189040 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 196198 21142277 ~ 21142348 (+) True trnap-ugg_23
trnai-aau_18 other downstream 200871 21146950 ~ 21147023 (+) True trnai-aau_18

Expression Profile