RNA id: TU383298


Basic Information

Item Value
RNA id TU383298
length 2325
RNA type TUCP
GC content 0.45
exon number 4
gene id G323615
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21021189 ~ 21157280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctttcattcactcagacagttttcagggttttttctgtcctctttatattttattagaatttaaaaatgttcagaaTTCACTTTACAGCTCAAGAATAGTTTAAACAGATTGTGATAAAACGATGGTGATTACAGTTTATTCTGAGTCTCAGGCTGCAGTGTGaaagggaaacacacacacacacacacacacacacacacacacaaacgcactcaaacacgcacacacacactcgttcgtacactcagacacacacacacacacaaaacacattctcatacacacacacacacagacagacagactcgTTCGAACACTCAcactaaagcacacacacacacacacacacacacacacacacacacacacacacacacactcgttccTCCGTCACTTGCGTTTATTCACCGTTTATTTCACCAGTACAGTTATAGTCATCCCGTCACTGTAgataataattatgataatttgCATAGATCGTTAGACAGCAATTTAATTTTATCATTAAGACATTATGGAATGTTCATTAAGACTCCGCCCCCTCCCCAAAACCCCGCCCCCTCCCATCACAACCTCACACAATCTTCCAGGAAATCTTCATCTCAGACGGAGGGACGTCCAGACCACGCTTGAGTCCCGGAGGAGTGGACTAGAGGAGAAGTGCGCACTACATGGGCCTTGTGCTTTAGCATTAATTTATCACacgtagctccgcccccaatGCCGCACCTACAGTATAACAGCATAGGCATGTGCCGATCATCAGCTGTGAGATATAATCACCATATTTACAAGATTCTCCTCATTTTGCaatttgaaaacatttgttCACTACCTAGGCAGCCTACTCCTGAATAAGGGAGAGTGAGTAGTGTGCCTAAGTAGGGAGCATGTTTAGGGGATAAAGTCTGTCCCTTATTTTGACACATTTAAAGCACATGTTCCTCAGTCAATCATGAACAAGCTCAGGATTCAGAACGGCACGCCAGTGGAAAAACCTGCTGAACgaggaatgatttttttaagaatataatcatctttttctttaaatacaaactCGCGATATCGTCAGAAACCGTGATAAAAACGTACAAATATCATGAGATGAAAGATTCCCATGGATCGGCACATGCCTGGCCAAGcgcaatgtttattttatttcatgatgtaatatctgtaaagctgctgcgTCATGgtttattacagtgtgtgtgtgtgtatatatgcgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttttgtaatagagtgtgtgtgttaagcacGCTCTCCACGGATGCGGCGTGCCAGCTGGATGTCTTTGGGCATGATGGTGACGCGCTTGGCGTGGATAGCGCACAGATTAGTGTCTTCAAACAGACCCACCAGGTACGCTTCACTcgcctcctacacacacacaattaacacaTTATTAACACTGAGACTCTTTACTGCTTCAGTCTTAAATATGAGTGTCGtgttctgatacacacacacagtactgtgcaaaagtcttagacacgtgtaaagaaatgctgtagagcaaagacacCTTCGAAAAATAATGACGTTAAAtggggtgccaagacttttgcacagcactacACGCTGTATATTGACACATAATTAAGTCTGTCTCtattaaatactgtgtaaaAAGTGTATGTGAGcgcttgtatgtgtgtgcgtgtgtgtgtatgctcatgtgtgtgtttgtgtatgcgtgcgtgcggtgtgtgtgtgcacagagtgtgtgtgcgtgtggtgtgtgtgtgcgtgtggtgtgtgtgtgcaaagagagtgtgtgtgtgtgtgtgtggtacctgCAGGGCTCCAATGGCTGCACTCTGGAACCTCAGATCGGTTTTAAAGTCCTGTGCGATTTCTCGGACGAGTCGCTGGAACGGCAGCTTCCTGATCAGCAGCTCTGTGGATTTCTGATAACGCCGGATCTCACGAAGAGCCACGGTACCaggcctgaacacacacacacacacacacgcgcgcgcacgtTAATACGAAACACACCGTATCAGCACTACACCAGAAGAGCCCTGGCCGCGTGCGTCACCTGTAACGGTGCGGTTTCTTCACCCCTCCTGTAGAGGGCGCACTCTTACGGGCCGCTTTAGTGGCGAGCTGTTTACGGGGAGCTTTCCCTCCTGTGGACTTACGGGCTGTCTGCTTTGTACGGGCCATATCTGCTCAAAATCacctgaaacaaacacacacacacacagcatgggTGAGGAGCAGTAATACACCtttagatattattttatatcccaaatgttctgtgtttctttaaGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383279 lncRNA upstream 75110 20933232 ~ 20946079 (+) True G323603
TU383246 lncRNA upstream 315995 20672934 ~ 20705194 (+) True G323578
TU383242 lncRNA upstream 348735 20671728 ~ 20672454 (+) True G323577
TU383238 lncRNA upstream 351029 20669685 ~ 20670160 (+) True G323576
TU383236 lncRNA upstream 367828 20652233 ~ 20653361 (+) True G323574
TU383306 lncRNA downstream 1066 21137913 ~ 21139687 (+) True G323618
XM_034314548.1 mRNA upstream 29585 20980749 ~ 20991604 (+) True LOC113524959
XM_034314550.1 mRNA upstream 29585 20980749 ~ 20991604 (+) False LOC113524959
XM_034314549.1 mRNA upstream 29587 20980749 ~ 20991602 (+) False LOC113524959
XM_026911369.2 mRNA upstream 128192 20886260 ~ 20892997 (+) True tecrl2b
XM_034297735.1 mRNA upstream 137583 20807627 ~ 20883606 (+) True col11a1b
trnap-ugg_22 other upstream 105714 20915404 ~ 20915475 (+) True trnap-ugg_22
XR_004580310.1 other upstream 361778 20637584 ~ 20659411 (+) False arhgef4
TU383181 other upstream 580628 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 2149829 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2598558 18415817 ~ 18422631 (+) False pex5lb
trnap-ugg_23 other downstream 5430 21142277 ~ 21142348 (+) True trnap-ugg_23
trnai-aau_18 other downstream 10103 21146950 ~ 21147023 (+) True trnai-aau_18

Expression Profile