RNA id: TU383300


Basic Information

Item Value
RNA id TU383300
length 378
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G323615
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21021189 ~ 21157280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGACAAACAACTCCTTTATTTATCTAATGAATAAAATCCGATACCCCAAGATACACTTCATACAAAACAATGTAGAAAAACCTGAGCAGTCACCTGCTACTGCCACACTGATTAACAAACATCAGCTcagaaatgagtaaaattaaaaattaaacattaaacagtcatgtgtgtgtgtgtgtgtgtgtgagagagagagtcagagagaaggACGACAAAGCggagcaaaaaaaatcattaaaattttatttttatcttaaacTGGTGAAAATGTGAAACACTTTTGCAAcgagattaaaaataataaaatataaaaacactcagtaacacacacacacacacacacacacacacacacacacacacacacacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383380 lncRNA upstream 660 21133446 ~ 21134459 (+) True G323676
TU383309 lncRNA upstream 2758 21130233 ~ 21132361 (+) True G323621
TU383371 lncRNA upstream 15703 21105444 ~ 21119416 (+) True G323669
TU383363 lncRNA upstream 41741 21086944 ~ 21093378 (+) True G323661
TU383340 lncRNA upstream 45185 21026825 ~ 21089934 (+) True G323643
XM_034297793.1 mRNA upstream 7290 21125873 ~ 21127829 (+) True LOC117595742
XM_034314548.1 mRNA upstream 143515 20980749 ~ 20991604 (+) True LOC113524959
XM_034314550.1 mRNA upstream 143515 20980749 ~ 20991604 (+) False LOC113524959
XM_034314549.1 mRNA upstream 143517 20980749 ~ 20991602 (+) False LOC113524959
XM_026911369.2 mRNA upstream 242122 20886260 ~ 20892997 (+) True tecrl2b
trnap-ugg_22 other upstream 219644 20915404 ~ 20915475 (+) True trnap-ugg_22
XR_004580310.1 other upstream 475708 20637584 ~ 20659411 (+) False arhgef4
TU383181 other upstream 694558 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 2263759 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2712488 18415817 ~ 18422631 (+) False pex5lb

Expression Profile