RNA id: TU383316


Basic Information

Item Value
RNA id TU383316
length 332
lncRNA type sense_over
GC content 0.53
exon number 2
gene id G323624
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20967513 ~ 21024078 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcacacacacacacacacacacacacacacacacacacacacacaaacacgcgcgcacacacacacacacacacacacacacacacacacacacacacacacaccttgtctcCAGCGAGGATCTTGAAGGAAGCGATGACCTGGTCCGCTGTGTCCGTGTCTGTCGTTTCCCGGGACATGAAGTCGATGAAGGCCTGGAAGGTCACGGCCCCGGTGTTGTTGGGGTCCACAATGGACATGATGCGGGCAAACTCAGCATCGCCCTGGCAACAGGGGTCAAAAGGTCAACCCAATCCAAACATCTCTAAATAACACTAACACTCAACACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383279 lncRNA upstream 21434 20933232 ~ 20946079 (+) True G323603
TU383246 lncRNA upstream 262319 20672934 ~ 20705194 (+) True G323578
TU383242 lncRNA upstream 295059 20671728 ~ 20672454 (+) True G323577
TU383238 lncRNA upstream 297353 20669685 ~ 20670160 (+) True G323576
TU383236 lncRNA upstream 314152 20652233 ~ 20653361 (+) True G323574
XR_004580335.1 lncRNA downstream 94 21024172 ~ 21024556 (+) True LOC117599988
TU383317 lncRNA downstream 2343 21026421 ~ 21037720 (+) True G323625
TU383318 lncRNA downstream 2343 21026421 ~ 21037720 (+) False G323625
TU383340 lncRNA downstream 2747 21026825 ~ 21089934 (+) True G323643
TU383341 lncRNA downstream 8800 21032878 ~ 21042418 (+) True G323644
XM_026911369.2 mRNA upstream 74516 20886260 ~ 20892997 (+) True tecrl2b
XM_034297735.1 mRNA upstream 83907 20807627 ~ 20883606 (+) True col11a1b
XM_034314646.1 mRNA upstream 303694 20637584 ~ 20663819 (+) True arhgef4
XM_034297793.1 mRNA downstream 101795 21125873 ~ 21127829 (+) True LOC117595742
trnap-ugg_22 other upstream 52038 20915404 ~ 20915475 (+) True trnap-ugg_22
XR_004580310.1 other upstream 308102 20637584 ~ 20659411 (+) False arhgef4
TU383181 other upstream 526952 20438702 ~ 20440561 (+) True G323534
XR_004580282.1 other upstream 2096153 18816009 ~ 18871360 (+) True slc44a5a
TU381842 other upstream 2544882 18415817 ~ 18422631 (+) False pex5lb
TU383295 other downstream 111041 21135119 ~ 21136847 (+) False G323615
trnap-ugg_23 other downstream 118199 21142277 ~ 21142348 (+) True trnap-ugg_23
trnai-aau_18 other downstream 122872 21146950 ~ 21147023 (+) True trnai-aau_18

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU464091 False 1353 lncRNA 0.37 3 CI01000299 289941 ~ 331840 (-)
mexican tetra (Astyanax mexicanus) TU464091 True 2119 lncRNA 0.44 5 NW_019172929.1 2378583 ~ 2381900 (+)