RNA id: TU383522


Basic Information

Item Value
RNA id TU383522
length 738
lncRNA type read_through
GC content 0.33
exon number 2
gene id G323781
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20417610 ~ 20442372 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CggctgtgtttcatttcaaaacacacaatttagttcatttccattttaattaacaattaCGTTTCTATCTATTAAAATGGAAGACAAGGTTCACGGCTCTTTAAACCGATTCTTCTTGTAGTTGAAGGAAGTTCAGTTACTCTTACTgttgaatttaataaaaatgtttccatGGAAACGGCGGCCGTCGTCAGTCAAAGAagaaaagattagaaaaaaatatacacagtattgtgcaaaagtcttggcaccccttttttttttttagtacaaactttgttatagatgtttattttctgacttctacattattgattcagaacaaaaacattttagattccaaacattagttttccagcacaaaatgaaatgttacagaaaaatgtttgtatgtcagtaaagaaagcagcagattccataagagacacttttcagataaaaacataatgaaggctgctgggtttggctgcagaaataagaagcgagtcgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttccagctcatttccttataaaactgcacacactgcacctcagatactgctttatttatttaaagcgaaggatcgtcacattaaatattgactttgtttcatttattactgtttactgctctttataggatttttttttaaatgtagaaacatttaatttcattatttttgaaggcgtctttactctacagcat

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383506 lncRNA downstream 41296 20370626 ~ 20376314 (-) True LOC117599978
XR_004580324.1 lncRNA downstream 46716 20370564 ~ 20370894 (-) False LOC117599978
TU383429 lncRNA downstream 232478 20129253 ~ 20185132 (-) True G323709
TU383418 lncRNA downstream 237049 20121770 ~ 20180561 (-) True G323706
XR_004580349.1 lncRNA downstream 600545 19815214 ~ 19817065 (-) True LOC117599996
TU383516 lncRNA upstream 3524 20444984 ~ 20446212 (-) True G323775
TU383530 lncRNA upstream 28670 20470130 ~ 20471017 (-) True G323787
XR_004580297.1 lncRNA upstream 40614 20482074 ~ 20493538 (-) False LOC117599955
TU383538 lncRNA upstream 40849 20482309 ~ 20527256 (-) False LOC117599955
TU383544 lncRNA upstream 54242 20495702 ~ 20501519 (-) True G323797
XM_034314778.1 mRNA downstream 12408 20388826 ~ 20405202 (-) True LOC113546371
XM_034314775.1 mRNA downstream 42939 20370971 ~ 20374671 (-) True LOC117599977
XM_026946206.2 mRNA downstream 66956 20338178 ~ 20350654 (-) False LOC113546384
XM_026946205.2 mRNA downstream 66956 20338178 ~ 20350654 (-) True LOC113546384
XM_026946165.2 mRNA downstream 81895 20302600 ~ 20335715 (-) True eif4g1a
XM_034314848.1 mRNA upstream 8988 20450448 ~ 20461880 (-) True gk5
XM_034297728.1 mRNA upstream 20555 20462015 ~ 20469569 (-) True LOC113546455
XM_034314890.1 mRNA upstream 259438 20700898 ~ 20714017 (-) True sh3glb1b
XM_034314622.1 mRNA upstream 291141 20732601 ~ 20757942 (-) True LOC113524963
XM_026911354.2 mRNA upstream 332572 20774032 ~ 20780151 (-) True amy2a
TU383462 other downstream 5804 20384201 ~ 20411806 (-) False LOC113546371
XR_004576925.1 other downstream 102398 20315137 ~ 20315212 (-) True LOC117595748
XR_003404720.2 other downstream 108037 20309497 ~ 20309573 (-) True LOC113546475
TU383446 other downstream 221938 20195294 ~ 20195672 (-) True G323726
XR_004580317.1 other downstream 910413 19498561 ~ 19507197 (-) False kdm4ab
TU383528 other upstream 26150 20467610 ~ 20469469 (-) False LOC113546455
TU383651 other upstream 269237 20710697 ~ 20713991 (-) False sh3glb1b
TU383689 other upstream 386566 20828026 ~ 20830104 (-) True G323902
TU383704 other upstream 519966 20961426 ~ 20969169 (-) False LOC113524960
TU383705 other upstream 520113 20961573 ~ 20976337 (-) False LOC113524960

Expression Profile