RNA id: TU383538


Basic Information

Item Value
RNA id TU383538
length 2597
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id LOC117599955
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20482074 ~ 20527256 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACAGTTGATCATTTCTCATCTGCGCTGCCTCCTGAAAGGATCCCACCccctctgtagtgcactagatttCCATTAGATTGCTGCCTGAAGTTAGCATCTGTCCAATACTAGGACTGCTGGAAGACACCTGTCCCCATGCTGCCTACCTAGGGAACCTTCACCCAAGCAGAACGCTACCTGTGataacagtaatgtgtgtgtgttgtgaataTCCCGGTCAATATAtgaccctaacacacacacacacacacacacacacactaaacaaatgatatttacatttaatcagCTTAATAGTGTgagaataaaactaaaaatgaaatgtaacatCCAGCTTCCTCTTCCTGCTCTTACGGTTCCAATTCAGTTTCCACTGCGCCCTCGTCCACTTCCCCTAACGACCCAGAAGCCTGCAGCAgcgaccaatcagagcgcacgGCTCGTTTCCGCTGAACCTATTGCAAACCCTGAAGAGCCACATCGACTCGCTCACTAGCTAGCGTGCTAATTAGCGAGCATGCTAAGTAGCTATCAGAGCACAGTTCTGTCAGCTGCTGTATGCAGACGGAgcaaatgcaaacaaatatatattttaacattccagtctgaaatttaaaaagatgTCAGCCATATGGAAAATAAATTGTGCTGGGTTacagcagtgcattctgggtaattaAACATGCTTTGGTAATCGTCAGTGACGTCGATTTTTCTCTAACACTCATCTCCCACACTGCACTAAAGTAACACAGTGAAATAAAGTCTTTAGCTGATTAACTgattaattaagtaaaaaaaattctgagtAACAAACACTGAAAGAGCTTCACAGCAAAATCtctaaaagcacacacacagcgtgaAGTCAGAGTGCTGTTTCGTTCATCACTTCAAACATCAGTAACcttaataaaactgtaacatCTCACAGTAGTATGGCAAGCTTCAGGAactaaatccacacacacacacacacacacacacacacacaaggtagGCGTGTCCTGATAGTTTATACCATGATAAGTGCTGATCTTACGATGATGCTACAGCTACACGTTTACCCGCGTCTGCTCTCACTACATCATCACTCGTTCACTCACAATCCCTCGCTCATTTTTCAGCTTCGACACAACCTCAGGACAGCTAACACAGCCAGCTACCTGGTGAAAGAAATGACTTGGAGAGGCTGCGTTAACATGTTAGCTAGCTCacgtaaccatggcaacagtgTCAGGAGATGAACTCAGAAGAGGAGGTGTCGGTTAGGAGACGGCGGCTCTGCTCCTCCCTCGGTAATGCCCAACAGAACTGTGGGATTGTCCTTTCTTCTTCAACTCTTTCTAAAATGAAGTGAAGTAAAGGTCAGTAACGCGTGTCCCAGGAGACGCCGGTCTTTACGCTGCCTTCTGAACGGGACAGGATTCATTCCTGCTCCCTAGCTAGGCACCCTCCTGTTCAGTGAAGGTTACAGTGAAGCGCACCTCAGGCGCGGTGCGAGCGATTATCAGCACACGCCACTGGCTGAGCACACAGACGCTCAGACTGGCTCTGTCACATGAGATGATGGGTTGGTGCTAATAGCATTTCTCAGCTGCTCAGTAGTGAGAGCTAACCATgctaacaccacacacacacacacacacacacacacacacacactctttaacacACAAAGCGAATCAATCAGATAGCACATGTCTCCTTTACACTGCAACTACGAGGCTAATGCTGCTAATGAGGTTTATTTTAGTCTGTAAATAATGAGTGAcatcattacatttattcacttataataattattcatatcactcattattaaataaacatctactgCTACAGTCTGGCTTTGGAGCTGGAACCTAAAGGGGTGTGGCCTACAGGACAGGAGTGGGGTGAGGCTTTGGGGTAAATCTAGGGGCGGGGCCTAAAAGGTGTGTCCTATAAGACAGGCTCTAGGGGGTGGGGCCTTGAGGTGAGGTACAGGGGTGGGGTCtaggaggcgtggcttatgAACTGGGCCTAGAGGGTGGGGTGTGGTCTAGCGAGGTTCTAGGGAAGGATTCTTCTGATGCtcagctacattagcctcgtaaCTCCAGCGCTAAATGAAGAGCATGTCTCAGTTAATCGCCTACATTTACGAGAACATGGTGGACATTTCAGATTTTGCTAAACAGCTCgtttaaatgcattttagaCATGTGcaatttttagaaatatttcttaaaacagCTTTAAGCCCTTAAAAGCTCTTCAGAAGCAGATAAACTTATAAAGCGTAAACAAACATCACTAGCTAAAGAGCAGACCTGCAGGAGGAAAGTTCCAGAGCTTTAGCGCGCGCGTGGCTGTGTGGAACAGAGCAGCGGTGACGTcgatcttttttttccacttccgGTTTCGAAATCGAAAGTTAGAAGTGCGAcgttagagaaagagagaaaagaagagtgAAGAAGTTCTGCTGCCATGCAGTCCTGCAGCATTCATCACTGTGTCCTGTTCTTCCTCACCCTCACATTCACCACTGctCCTGTATCAGCTGCTGTCTGTCCTACACTGGCGAAGCTTCATCAGCCTGTGATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383530 lncRNA downstream 11292 20470130 ~ 20471017 (-) True G323787
TU383516 lncRNA downstream 36097 20444984 ~ 20446212 (-) True G323775
TU383523 lncRNA downstream 39937 20417610 ~ 20442372 (-) False G323781
TU383522 lncRNA downstream 40849 20417610 ~ 20441460 (-) True G323781
TU383558 lncRNA upstream 1097 20528353 ~ 20528878 (-) True G323806
TU383559 lncRNA upstream 4229 20531485 ~ 20532305 (-) True G323807
TU383623 lncRNA upstream 104999 20632255 ~ 20639180 (-) True G323854
TU383626 lncRNA upstream 114183 20641439 ~ 20653361 (-) True G323856
TU383638 lncRNA upstream 127038 20654294 ~ 20655831 (-) True G323867
XM_034297728.1 mRNA downstream 12740 20462015 ~ 20469569 (-) True LOC113546455
XM_034314848.1 mRNA downstream 20429 20450448 ~ 20461880 (-) True gk5
XM_034314710.1 mRNA downstream 37880 20436489 ~ 20444429 (-) True ppp1r7
XM_034314709.1 mRNA downstream 48767 20422172 ~ 20433542 (-) True ubxn7
XM_034314778.1 mRNA downstream 77107 20388826 ~ 20405202 (-) True LOC113546371
XM_034314890.1 mRNA upstream 173642 20700898 ~ 20714017 (-) True sh3glb1b
XM_034314622.1 mRNA upstream 205345 20732601 ~ 20757942 (-) True LOC113524963
XM_026911354.2 mRNA upstream 246776 20774032 ~ 20780151 (-) True amy2a
XM_034314686.1 mRNA upstream 366487 20893743 ~ 20943796 (-) True abca4b
XM_034297737.1 mRNA upstream 418880 20946136 ~ 20976372 (-) True LOC113524960
TU383528 other downstream 12840 20467610 ~ 20469469 (-) False LOC113546455
TU383462 other downstream 70503 20384201 ~ 20411806 (-) False LOC113546371
XR_004576925.1 other downstream 167097 20315137 ~ 20315212 (-) True LOC117595748
XR_003404720.2 other downstream 172736 20309497 ~ 20309573 (-) True LOC113546475
TU383446 other downstream 286637 20195294 ~ 20195672 (-) True G323726
TU383651 other upstream 183441 20710697 ~ 20713991 (-) False sh3glb1b
TU383689 other upstream 300770 20828026 ~ 20830104 (-) True G323902
TU383704 other upstream 434170 20961426 ~ 20969169 (-) False LOC113524960
TU383705 other upstream 434317 20961573 ~ 20976337 (-) False LOC113524960
TU383785 other upstream 524951 21052207 ~ 21097709 (-) True G323963

Expression Profile