Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004580297.1 |
| length | 523 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC117599955 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 20482074 ~ 20527256 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU383530 | lncRNA | downstream | 11057 | 20470130 ~ 20471017 (-) | True | G323787 |
| TU383516 | lncRNA | downstream | 35862 | 20444984 ~ 20446212 (-) | True | G323775 |
| TU383523 | lncRNA | downstream | 39702 | 20417610 ~ 20442372 (-) | False | G323781 |
| TU383522 | lncRNA | downstream | 40614 | 20417610 ~ 20441460 (-) | True | G323781 |
| TU383513 | lncRNA | downstream | 46034 | 20389241 ~ 20436040 (-) | True | G323773 |
| TU383544 | lncRNA | upstream | 2164 | 20495702 ~ 20501519 (-) | True | G323797 |
| TU383545 | lncRNA | upstream | 2164 | 20495702 ~ 20501519 (-) | False | G323797 |
| TU383550 | lncRNA | upstream | 20735 | 20514273 ~ 20515241 (-) | True | G323799 |
| TU383539 | lncRNA | upstream | 27621 | 20521159 ~ 20527256 (-) | True | LOC117599955 |
| TU383558 | lncRNA | upstream | 34815 | 20528353 ~ 20528878 (-) | True | G323806 |
| XM_034297728.1 | mRNA | downstream | 12505 | 20462015 ~ 20469569 (-) | True | LOC113546455 |
| XM_034314848.1 | mRNA | downstream | 20194 | 20450448 ~ 20461880 (-) | True | gk5 |
| XM_034314710.1 | mRNA | downstream | 37645 | 20436489 ~ 20444429 (-) | True | ppp1r7 |
| XM_034314709.1 | mRNA | downstream | 48532 | 20422172 ~ 20433542 (-) | True | ubxn7 |
| XM_034314778.1 | mRNA | downstream | 76872 | 20388826 ~ 20405202 (-) | True | LOC113546371 |
| XM_034314890.1 | mRNA | upstream | 207360 | 20700898 ~ 20714017 (-) | True | sh3glb1b |
| XM_034314622.1 | mRNA | upstream | 239063 | 20732601 ~ 20757942 (-) | True | LOC113524963 |
| XM_026911354.2 | mRNA | upstream | 280494 | 20774032 ~ 20780151 (-) | True | amy2a |
| XM_034314686.1 | mRNA | upstream | 400205 | 20893743 ~ 20943796 (-) | True | abca4b |
| XM_034297737.1 | mRNA | upstream | 452598 | 20946136 ~ 20976372 (-) | True | LOC113524960 |
| TU383528 | other | downstream | 12605 | 20467610 ~ 20469469 (-) | False | LOC113546455 |
| TU383462 | other | downstream | 70268 | 20384201 ~ 20411806 (-) | False | LOC113546371 |
| XR_004576925.1 | other | downstream | 166862 | 20315137 ~ 20315212 (-) | True | LOC117595748 |
| XR_003404720.2 | other | downstream | 172501 | 20309497 ~ 20309573 (-) | True | LOC113546475 |
| TU383446 | other | downstream | 286402 | 20195294 ~ 20195672 (-) | True | G323726 |
| TU383651 | other | upstream | 217159 | 20710697 ~ 20713991 (-) | False | sh3glb1b |
| TU383689 | other | upstream | 334488 | 20828026 ~ 20830104 (-) | True | G323902 |
| TU383704 | other | upstream | 467888 | 20961426 ~ 20969169 (-) | False | LOC113524960 |
| TU383705 | other | upstream | 468035 | 20961573 ~ 20976337 (-) | False | LOC113524960 |
| TU383785 | other | upstream | 558669 | 21052207 ~ 21097709 (-) | True | G323963 |
