RNA id: XM_034314890.1


Basic Information

Item Value
RNA id XM_034314890.1
length 1168
RNA type mRNA
GC content 0.48
exon number 8
gene id sh3glb1b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 20666291 ~ 20714017 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGAATCCTGCTTTATTTGGATTAGTCAGGGTTAGCATTAGCGCTAGCtttagcgttagcattagcattagcgctGGAATCTTACGGAAGCTAGCGCTTTGACATGGACAGGGAGAAACTCGGATTAATCCACTTTAACTCGGATTAACGCGAATCTCTGTCTCGTCACACAACTAAAccagttaataataatattaataataataataatttagcgAGTCGTGTGGTTATATAAAccgctagctagctaactagccaaACTAAAGGGAGTAGTTGTTGGTTCCGCAAACTGTTAGCACTGTTagtttatttatctttaattgACGGAGTTAAAGGATGGATTTCAGCGTCAGGAGACTCGCAGCAGATGCTGGAACTTTCCTGAGCCGCGCGGTGCAGTTCACAGAGGAGAAGCTTGGCCAGGCGGAGAGGACCGAGTTAGACGCTCACCTGGAGAACCTGCTGTCGAAAGCCGAGTCGACGAAACACTGGACGGAGAAGATCATGAAGCAGACGGAGGTTTTACTGCAGCCCAACCCGAACGTGAGGATGGAGGAGTTTCTGTACGAGAAGCTGGAGAGGAAAATCCCAACACGAGTCAACAACCACGAGCTGCTGGGGAatttttgtttattatgtgtttgtttatttatttatttatttatttccctgcTTGTTCCAGGCAGCGCTCTGATTAAATGCGGCGAGGTGGAGAAGCAGCTCGGCGGCTCGGAGCGAGAGCTGATCCAGAGCTCAGCCATTAACTTCCTCACTCCGTTCAGGAACTTTATCGACGGAGATTATAAGACCATCTCGAAGGAGCGTAAGCTGCTGCAGGTGAAACGCCTCGACCTGGACGCGGCTAAAACACGGCTAAAAAAAGCTCGAGCAGCAGACGCTCGCTCTGCGGAgtttagctccgccccctcgcCAGGAGAGGAGTACGTGTTTTCTTACATGCTCTCCTTCTTGCATGTCAAATGGCTGAAGTTTTGGGCTCAGGAGATCCAGCAGgcAGAGACGGAGCTGAGGATAGCTCAGAGTGAGTTTGATCGCCAGGCGGAGATCACCAGGTTACTGCTGGAGGGAATCAGCAGCACTCACGTACGTACGCTAATCATCTTCTGCTTATAGTGAACTTCTAatccagcaacacacacacacacaca

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383614 lncRNA downstream 4743 20662755 ~ 20696155 (-) True G323850
TU383613 lncRNA downstream 5731 20662755 ~ 20695167 (-) False G323850
TU383654 lncRNA downstream 28451 20671770 ~ 20672447 (-) False G323877
TU383655 lncRNA downstream 28451 20671770 ~ 20672447 (-) True G323877
TU383652 lncRNA downstream 30723 20669688 ~ 20670175 (-) True G323876
TU383685 lncRNA upstream 106472 20820489 ~ 20821095 (-) True G323898
TU383719 lncRNA upstream 150448 20864465 ~ 20864950 (-) True G323923
TU383698 lncRNA upstream 218817 20932834 ~ 20946068 (-) True G323907
TU383699 lncRNA upstream 219212 20933229 ~ 20946068 (-) False G323907
TU383701 lncRNA upstream 219212 20933229 ~ 20946068 (-) False G323907
XM_034297728.1 mRNA downstream 231329 20462015 ~ 20469569 (-) True LOC113546455
XM_034314848.1 mRNA downstream 239018 20450448 ~ 20461880 (-) True gk5
XM_034314710.1 mRNA downstream 256469 20436489 ~ 20444429 (-) True ppp1r7
XM_034314709.1 mRNA downstream 267356 20422172 ~ 20433542 (-) True ubxn7
XM_034314778.1 mRNA downstream 295696 20388826 ~ 20405202 (-) True LOC113546371
XM_034314622.1 mRNA upstream 18584 20732601 ~ 20757942 (-) True LOC113524963
XM_026911354.2 mRNA upstream 60015 20774032 ~ 20780151 (-) True amy2a
XM_034314686.1 mRNA upstream 179726 20893743 ~ 20943796 (-) True abca4b
XM_034297737.1 mRNA upstream 232119 20946136 ~ 20976372 (-) True LOC113524960
XM_026911371.2 mRNA upstream 277870 20991887 ~ 20995639 (-) True LOC113524969
TU383528 other downstream 231429 20467610 ~ 20469469 (-) False LOC113546455
TU383462 other downstream 289092 20384201 ~ 20411806 (-) False LOC113546371
XR_004576925.1 other downstream 385686 20315137 ~ 20315212 (-) True LOC117595748
XR_003404720.2 other downstream 391325 20309497 ~ 20309573 (-) True LOC113546475
TU383446 other downstream 505226 20195294 ~ 20195672 (-) True G323726
TU383689 other upstream 114009 20828026 ~ 20830104 (-) True G323902
TU383704 other upstream 247409 20961426 ~ 20969169 (-) False LOC113524960
TU383705 other upstream 247556 20961573 ~ 20976337 (-) False LOC113524960
TU383785 other upstream 338190 21052207 ~ 21097709 (-) True G323963
TU383786 other upstream 421117 21135134 ~ 21137694 (-) False si:ch1073-429i10.3

Expression Profile