Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU383698 |
| length | 703 |
| lncRNA type | sense_over |
| GC content | 0.43 |
| exon number | 2 |
| gene id | G323907 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 20932834 ~ 20946068 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0048884 | neuromast development | biological_process |
| id | description |
|---|---|
| ko05168 | Herpes simplex virus 1 infection |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU383719 | lncRNA | downstream | 67884 | 20864465 ~ 20864950 (-) | True | G323923 |
| TU383685 | lncRNA | downstream | 111739 | 20820489 ~ 20821095 (-) | True | G323898 |
| TU383650 | lncRNA | downstream | 225610 | 20666291 ~ 20707224 (-) | False | sh3glb1b |
| XR_004580281.1 | lncRNA | upstream | 35370 | 20981438 ~ 20990308 (-) | True | LOC117599936 |
| XR_004580331.1 | lncRNA | upstream | 193302 | 21139370 ~ 21146706 (-) | True | LOC117599984 |
| TU383817 | lncRNA | upstream | 252022 | 21198090 ~ 21198331 (-) | True | G323989 |
| TU383831 | lncRNA | upstream | 276108 | 21222176 ~ 21222600 (-) | True | G324001 |
| XM_026911354.2 | mRNA | downstream | 152683 | 20774032 ~ 20780151 (-) | True | amy2a |
| XM_034314622.1 | mRNA | downstream | 174892 | 20732601 ~ 20757942 (-) | True | LOC113524963 |
| XM_034314890.1 | mRNA | downstream | 218817 | 20700898 ~ 20714017 (-) | True | sh3glb1b |
| XM_034297728.1 | mRNA | downstream | 463265 | 20462015 ~ 20469569 (-) | True | LOC113546455 |
| XM_034314848.1 | mRNA | downstream | 470954 | 20450448 ~ 20461880 (-) | True | gk5 |
| XM_034297737.1 | mRNA | upstream | 68 | 20946136 ~ 20976372 (-) | True | LOC113524960 |
| XM_026911371.2 | mRNA | upstream | 45819 | 20991887 ~ 20995639 (-) | True | LOC113524969 |
| XM_034297795.1 | mRNA | upstream | 175657 | 21121725 ~ 21134401 (-) | False | eif3k |
| XM_034297794.1 | mRNA | upstream | 182166 | 21128234 ~ 21134401 (-) | True | eif3k |
| XM_026911898.2 | mRNA | upstream | 189050 | 21135118 ~ 21137825 (-) | True | si:ch1073-429i10.3 |
| TU383689 | other | downstream | 102730 | 20828026 ~ 20830104 (-) | True | G323902 |
| TU383651 | other | downstream | 218843 | 20710697 ~ 20713991 (-) | False | sh3glb1b |
| TU383528 | other | downstream | 463365 | 20467610 ~ 20469469 (-) | False | LOC113546455 |
| TU383462 | other | downstream | 521028 | 20384201 ~ 20411806 (-) | False | LOC113546371 |
| XR_004576925.1 | other | downstream | 617622 | 20315137 ~ 20315212 (-) | True | LOC117595748 |
| TU383704 | other | upstream | 15358 | 20961426 ~ 20969169 (-) | False | LOC113524960 |
| TU383705 | other | upstream | 15505 | 20961573 ~ 20976337 (-) | False | LOC113524960 |
| TU383785 | other | upstream | 106139 | 21052207 ~ 21097709 (-) | True | G323963 |
| TU383786 | other | upstream | 189066 | 21135134 ~ 21137694 (-) | False | si:ch1073-429i10.3 |
