RNA id: TU383786


Basic Information

Item Value
RNA id TU383786
length 1208
RNA type TUCP
GC content 0.45
exon number 4
gene id si:ch1073-429i10.3
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21135118 ~ 21137825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAGGtggcaaaaaaacaacactaacaACATGACAACGAACCACTAAAAACGACATTCAGGCTTAATAACGTCTCTTCAGTTTCCGCCTAAACATACAAGgtGATTTTGAGCAGATATGGCCCGTACAAAGCAGACAGCCCGTAAGTCCACAGGAGGGAAAGCTCCCCGTAAACAGCTCGCCACTAAAGCGGCCCGTAAGAGTGCGCCCTCTACAGGAGGGGTGAAGAAACCGCACCGTTACAGgcctGGTACCGTGGCTCTTCGTGAGATCCGGCGTTATCAGAAATCCACAGAGCTGCTGATCAGGAAGCTGCCGTTCCAGCGACTCGTCCGAGAAATCGCACAGGACTTTAAAACCGATCTGAGGTTCCAGAGTGCAGCCATTGGAGCCCTGcaggaggcgAGTGAAGCGTACCTGGTGGGTCTGTTTGAAGACACTAATCTGTGCGCTATCCACGCCAAGCGCGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGCATCCGTGGAGAGCgtgcttaacacacacactctattacaaaatacacacacacacacacacacacacacacactctattacaaaaatacacactctCATATATCACACaatgtccctctctctgtgtgtctctgtctctcctcctgtccttgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgattagtgaaACCTCTGAGTGTAACACGAGGAGGCTCCTTTTGGTGTGGAATTGTGGGTAAAACCTGCGTTATTGGGGTTTAGGGTTTTTGGGTGTCTTTAGAGAGCTTCATCAATGGATTTAGTGTGGCTCAgtttctccctctgtgtgtgtgtgtgagagagagtgagtgtgagagagtgtgtgtgtgtgtgtgtgtgtgtgttactgagtgtttttatattttattatttttaatctcgTTGCAAAAGTGTTTCACATTTTCACCAgtttaagataaaaataaaattttaatgattttttttgctccGCTTTGTCGTccttctctctgactctctctctcacacacacacacacacacacatgactgtttaatgtttaatttttaattttactcatttctgAGCTGATGTTTGTTAATCAGTGTGGCAGTAGCAGGTGACTGCTCAGGTTTTTCTACATTGTTTTGTATGAAGTGTATCTTGGGGTATCGGATTTTATTCATTAGATAAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580281.1 lncRNA downstream 144826 20981438 ~ 20990308 (-) True LOC117599936
TU383698 lncRNA downstream 189066 20932834 ~ 20946068 (-) True G323907
TU383699 lncRNA downstream 189066 20933229 ~ 20946068 (-) False G323907
TU383701 lncRNA downstream 189066 20933229 ~ 20946068 (-) False G323907
TU383719 lncRNA downstream 270184 20864465 ~ 20864950 (-) True G323923
XR_004580331.1 lncRNA upstream 1676 21139370 ~ 21146706 (-) True LOC117599984
TU383817 lncRNA upstream 60396 21198090 ~ 21198331 (-) True G323989
TU383831 lncRNA upstream 84482 21222176 ~ 21222600 (-) True G324001
XM_034297795.1 mRNA downstream 733 21121725 ~ 21134401 (-) False eif3k
XM_034297794.1 mRNA downstream 733 21128234 ~ 21134401 (-) True eif3k
XM_026911371.2 mRNA downstream 139495 20991887 ~ 20995639 (-) True LOC113524969
XM_034297737.1 mRNA downstream 158762 20946136 ~ 20976372 (-) True LOC113524960
XM_034314686.1 mRNA downstream 191338 20893743 ~ 20943796 (-) True abca4b
XM_034314689.1 mRNA upstream 981 21138675 ~ 21147038 (-) True LOC113525403
XM_034314905.1 mRNA upstream 10187 21147881 ~ 21164789 (-) False ngef
XM_034314906.1 mRNA upstream 10187 21147881 ~ 21164628 (-) False ngef
XM_034314904.1 mRNA upstream 10187 21147881 ~ 21164628 (-) True ngef
XM_026911894.2 mRNA upstream 29699 21167393 ~ 21172331 (-) False gpr55a
TU383785 other downstream 37425 21052207 ~ 21097709 (-) True G323963
TU383705 other downstream 158797 20961573 ~ 20976337 (-) False LOC113524960
TU383704 other downstream 165965 20961426 ~ 20969169 (-) False LOC113524960
TU383689 other downstream 305030 20828026 ~ 20830104 (-) True G323902
TU383651 other downstream 421143 20710697 ~ 20713991 (-) False sh3glb1b

Expression Profile