RNA id: XM_026911898.2


Basic Information

Item Value
RNA id XM_026911898.2
length 1355
RNA type mRNA
GC content 0.46
exon number 4
gene id si:ch1073-429i10.3
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21135118 ~ 21137825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCAAACGCTGCCTCCTGTGTCAGGATTGGCTTGTGTTTCAAACTGACACTAATGCTGTCCAATCAGAGGATTGCTTGTGATCGCGAACGTCGGCACTATCCCAGCagcagggggcggggcttgtcgGAATACAGGtggcaaaaaaacaacactaacaACATGACAACGAACCACTAAAAACGACATTCAGGCTTAATAACGTCTCTTCAGTTTCCGCCTAAACATACAAGgtGATTTTGAGCAGATATGGCCCGTACAAAGCAGACAGCCCGTAAGTCCACAGGAGGGAAAGCTCCCCGTAAACAGCTCGCCACTAAAGCGGCCCGTAAGAGTGCGCCCTCTACAGGAGGGGTGAAGAAACCGCACCGTTACAGgcctGGTACCGTGGCTCTTCGTGAGATCCGGCGTTATCAGAAATCCACAGAGCTGCTGATCAGGAAGCTGCCGTTCCAGCGACTCGTCCGAGAAATCGCACAGGACTTTAAAACCGATCTGAGGTTCCAGAGTGCAGCCATTGGAGCCCTGcaggaggcgAGTGAAGCGTACCTGGTGGGTCTGTTTGAAGACACTAATCTGTGCGCTATCCACGCCAAGCGCGTCACCATCATGCCCAAAGACATCCAGCTGGCACGCCGCATCCGTGGAGAGCgtgcttaacacacacactctattacaaaatacacacacacacacacacacacacacacactctattacaaaaatacacactctCATATATCACACaatgtccctctctctgtgtgtctctgtctctcctcctgtccttgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgattagtgaaACCTCTGAGTGTAACACGAGGAGGCTCCTTTTGGTGTGGAATTGTGGGTAAAACCTGCGTTATTGGGGTTTAGGGTTTTTGGGTGTCTTTAGAGAGCTTCATCAATGGATTTAGTGTGGCTCAgtttctccctctgtgtgtgtgtgtgagagagagtgagtgtgagagagtgtgtgtgtgtgtgtgtgtgtgtgttactgagtgtttttatattttattatttttaatctcgTTGCAAAAGTGTTTCACATTTTCACCAgtttaagataaaaataaaattttaatgattttttttgctccGCTTTGTCGTccttctctctgactctctctctcacacacacacacacacacacatgactgtttaatgtttaatttttaattttactcatttctgAGCTGATGTTTGTTAATCAGTGTGGCAGTAGCAGGTGACTGCTCAGGTTTTTCTACATTGTTTTGTATGAAGTGTATCTTGGGGTATCGGATTTTATTCATTAGATAAATAAAGGAGTTGTTTGTCCTGA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0006629 lipid metabolic process biological_process
GO:1902340 negative regulation of chromosome condensation biological_process
GO:0006997 nucleus organization biological_process
GO:0007596 blood coagulation biological_process
GO:0009725 response to hormone biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0007420 brain development biological_process
GO:0007140 male meiotic nuclear division biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007155 cell adhesion biological_process
GO:0090230 regulation of centromere complex assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0001740 Barr body cellular_component
GO:0005576 extracellular region cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005700 polytene chromosome cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K11253 H3; histone H3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580281.1 lncRNA downstream 144810 20981438 ~ 20990308 (-) True LOC117599936
TU383698 lncRNA downstream 189050 20932834 ~ 20946068 (-) True G323907
TU383699 lncRNA downstream 189050 20933229 ~ 20946068 (-) False G323907
TU383701 lncRNA downstream 189050 20933229 ~ 20946068 (-) False G323907
TU383719 lncRNA downstream 270168 20864465 ~ 20864950 (-) True G323923
XR_004580331.1 lncRNA upstream 1545 21139370 ~ 21146706 (-) True LOC117599984
TU383817 lncRNA upstream 60265 21198090 ~ 21198331 (-) True G323989
TU383831 lncRNA upstream 84351 21222176 ~ 21222600 (-) True G324001
XM_034297795.1 mRNA downstream 717 21121725 ~ 21134401 (-) False eif3k
XM_034297794.1 mRNA downstream 717 21128234 ~ 21134401 (-) True eif3k
XM_026911371.2 mRNA downstream 139479 20991887 ~ 20995639 (-) True LOC113524969
XM_034297737.1 mRNA downstream 158746 20946136 ~ 20976372 (-) True LOC113524960
XM_034314686.1 mRNA downstream 191322 20893743 ~ 20943796 (-) True abca4b
XM_034314689.1 mRNA upstream 850 21138675 ~ 21147038 (-) True LOC113525403
XM_034314905.1 mRNA upstream 10056 21147881 ~ 21164789 (-) False ngef
XM_034314906.1 mRNA upstream 10056 21147881 ~ 21164628 (-) False ngef
XM_034314904.1 mRNA upstream 10056 21147881 ~ 21164628 (-) True ngef
XM_026911894.2 mRNA upstream 29568 21167393 ~ 21172331 (-) False gpr55a
TU383785 other downstream 37409 21052207 ~ 21097709 (-) True G323963
TU383705 other downstream 158781 20961573 ~ 20976337 (-) False LOC113524960
TU383704 other downstream 165949 20961426 ~ 20969169 (-) False LOC113524960
TU383689 other downstream 305014 20828026 ~ 20830104 (-) True G323902
TU383651 other downstream 421127 20710697 ~ 20713991 (-) False sh3glb1b

Expression Profile