RNA id: TU383817


Basic Information

Item Value
RNA id TU383817
length 242
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G323989
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21198090 ~ 21198331 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggtgtagtgtgtatatgtggtgagggtgtagtgtgtatatgtggtgaGGGTATAGTGTAGTTTAGTGTTTatatgtagtgtagtgtgtatatgcggtgagggtgtagtgtgtatttgtggtgagggtgtagtgtagcgtagtgtctgtatgtagtgagggtgtagtgtgtatatgtagtgagggtgtagtgtgtatttgtggtgagggtgtagtgtagcgtagtgtctgtatgtagtgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580331.1 lncRNA downstream 51384 21139370 ~ 21146706 (-) True LOC117599984
XR_004580281.1 lncRNA downstream 207782 20981438 ~ 20990308 (-) True LOC117599936
TU383698 lncRNA downstream 252022 20932834 ~ 20946068 (-) True G323907
TU383699 lncRNA downstream 252022 20933229 ~ 20946068 (-) False G323907
TU383701 lncRNA downstream 252022 20933229 ~ 20946068 (-) False G323907
TU383831 lncRNA upstream 23845 21222176 ~ 21222600 (-) True G324001
XM_034314595.1 mRNA downstream 6920 21183325 ~ 21191170 (-) True LOC117599949
XM_026911894.2 mRNA downstream 25759 21167393 ~ 21172331 (-) False gpr55a
XM_026911893.2 mRNA downstream 26692 21167393 ~ 21171398 (-) True gpr55a
XM_034314905.1 mRNA downstream 33301 21147881 ~ 21164789 (-) False ngef
XM_034314906.1 mRNA downstream 33462 21147881 ~ 21164628 (-) False ngef
XM_026911902.2 mRNA upstream 865 21199196 ~ 21217695 (-) True LOC113525405
XM_034314870.1 mRNA upstream 19492 21217823 ~ 21219726 (-) True LOC117599990
XM_026911904.2 mRNA upstream 25485 21223816 ~ 21224580 (-) False insl3
XM_026911903.2 mRNA upstream 25485 21223816 ~ 21224580 (-) True insl3
XM_026911896.2 mRNA upstream 27463 21225794 ~ 21228030 (-) True si:rp71-39b20.4
TU383786 other downstream 60396 21135134 ~ 21137694 (-) False si:ch1073-429i10.3
TU383785 other downstream 100381 21052207 ~ 21097709 (-) True G323963
TU383705 other downstream 221753 20961573 ~ 20976337 (-) False LOC113524960
TU383704 other downstream 228921 20961426 ~ 20969169 (-) False LOC113524960
TU383689 other downstream 367986 20828026 ~ 20830104 (-) True G323902

Expression Profile