RNA id: XM_026911744.2


Basic Information

Item Value
RNA id XM_026911744.2
length 898
RNA type mRNA
GC content 0.46
exon number 7
gene id rwdd1
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4175 ~ 8335 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caaaaaaaaaacctccaatctggcaacccggctGCCGGCTGTATTAGCAGTTACGCTTCGCACACGCTTTTCAGGTTTCTGTTCCCAAACTGGGACATTAGTCGATGGATAATTGTGATAAAACTATTATAAAATGACCGATTACGGAGAGGAACAGCGGAATGAGCTGGAGGCGATTCAGTCCATTTATCCCGATTCATTCACAGTTCTGTGTGAAGATCCGATAAGTTTCACCATCACGGTTTCCTCTGATGCTGGAGAGAATGATGAGAtGGTACAGGTGACGCTGAAGTTCACCTATGTGGAGAATTACCCAGATGAAGCGCCGCTGTGGGAGATTCAGTCACAGGAAAACCTGGAGGACAGGGACACCGAGGACATCCTGTCtctgttacagcagcaggcaGAGGAGAACCTGGGCATGGTGATGATCTTCACACTGGTGACAGCTGTGCAGGAGAAACTGAACGAAGTCATAGATCAGATGAAGatcagaagagaagaagaaaagaggagaaaagaaagagaggctgaaGAGGCCGagaagAAAGCATTTCAGGGAACTGTAGTTACCATCGAGAACTTCCTGGCATGGAAGGCACGGTTTGAGCGAGAGATGGCCgagctgaagaggaaaaaacagaaagaggacGAGCAGGCTGGAAAAAACAAACTCACTGGAAAGCAGCTGTTTGAAAGAGACCGGAACCTGGACACGTCAGATATTCAGTTCTTGGAGGATGttGGAAACAGCGTGGAAGTGGACGAGTCTTTATTCCAGGACATGGACGATTTGGAGCTGGATGAAGATGATCCTGATTTTGACCCCCTGGATTTGGGCAGTGATGATGACGATTAAtgtttaatcaattaataaacTTTTGCAGTAAAAGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU369782 lncRNA downstream 103436 111771 ~ 112458 (+) True G312177
TU369784 lncRNA downstream 104482 112817 ~ 113108 (+) True G312179
TU369786 lncRNA downstream 107797 116132 ~ 121332 (+) True LOC113525271
XR_004580289.1 lncRNA downstream 110623 118958 ~ 121478 (+) False LOC113525271
XR_004576912.1 lncRNA downstream 152170 160505 ~ 164094 (+) True LOC113525279
XM_034314842.1 mRNA downstream 12944 21279 ~ 31256 (+) False kpna5
XM_034314843.1 mRNA downstream 12958 21293 ~ 31256 (+) False kpna5
XM_034314844.1 mRNA downstream 12960 21295 ~ 31256 (+) False kpna5
XM_034314845.1 mRNA downstream 12961 21296 ~ 31256 (+) False kpna5
XM_034314841.1 mRNA downstream 12968 21303 ~ 31855 (+) True kpna5
TU369774 other downstream 84149 92484 ~ 92915 (+) True G312171
TU369775 other downstream 85564 93899 ~ 94925 (+) True G312172
TU369797 other downstream 165903 174238 ~ 175541 (+) True G312191
TU369780 other downstream 181204 189539 ~ 193234 (+) True pnrc2
TU369781 other downstream 181204 189539 ~ 193234 (+) False pnrc2

Expression Profile