RNA id: XM_026911896.2


Basic Information

Item Value
RNA id XM_026911896.2
length 1809
RNA type mRNA
GC content 0.40
exon number 2
gene id si:rp71-39b20.4
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21225794 ~ 21228030 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGCTACTTGAGGGATTGATGATTTGGAGTGTGTTTTTGTCACAATTTAAACTATTAATTTGACTGAACCTGGAAAAATATTCTTAGACTGTTTTTTGATTTCTTTCTCAAATAATTGCTTGTCAGTGGGTAGACACctcattcttctttttctgtagATCTGCAATGATGAACCAATCGAGGCGTCATTTCAAACAGCTGATAAAGAGGCGATCAAGTCTTTTTGCTAGCGTTAAACTCAATGCCAGCTTCTCACAAAGCATCGAGGAAGAGGACAGtgcttttcctttttcacaGGACAGTTCTGTTAAACCATGGACATCAATGGACAGACTCGACAGTCCGGTGAATAAAgtagaagatttaaaaaatacaagaaaagaaaataaatgtaatgatacAAAGCCACTGCACAGACATTCGGGATTGATAAGCCTTAATATAGGTGGAAAATTGTTTCATCTTTCCAGACATCTGGCCATTAAATATCCTAAATCACGAATCGGGGCTTTAGCTGTGTGTTCGGATCCTGTAGAGCGGCTGACGCTCTGCGATGATTACTGTGTGATCAATAATGAATTTTTCTTTGACCGAGACCCAACGTTCTTCCACTACATCTTCCACCTGTACTACAGTAACATGCTCTGGGTGATCGAGAGCGTGTGTCCCATTCACTTTGAGGAAGAAATTGAGTTTtggggtttaaatctgaatgacACACCTCGCTGCTGTCGAATCTTGTATGAGGAAAAAGTGGATGAAATTCGAGACCAGCTGAAGGTGAATAAAGAACTGATGGCTGAAATCGAGCCTGTTCACAATGAGGAGggatttaaaacaatgtttctGGGTGATTTTCGCAAGACTCTTTGGGATTTAATGGAAAATCCGTACTCATCTGTGGGAGCAAAGTTTTTTGCTGTGTTGTCCACCACCTTTGTGCTCATCTCAATTGTGGCAATGACTCTAAACACTGTGAGTGAACTGACAGAATACAAAATTTATGGAAGAACATACATGGAGTTTGTCGAGATCAGTTCAATTCTCTTCTTCACCTTTGAGTATTTCCTTCGTCTCCTGACCACCTGTGATGTGAAGAATTTCCTGAAAAGTGCCCTGAACTTTGTTGACTTGGTAGCGGTGATGCCGTATTTTATCCAGCTGGTGTTTGAGGCATTTTCTGATCAGGAAGATCTCAGTGTTCAAGACGACCTCAAAACAATGGCACGAGTGAGCAAAGTCAGCAAAGTGCTAAAAGTTGTCAAATTGATGAGAATTTTTCGCATTCTGAAATTAGCAAGACACTCGACTGGAATGCGAGCATTTGGATTCACTCTGCGTCAGTGTTTCGAGCAGGTGTGctgcttatttttattcattattatgggaatctttgttttttctgctcTAATGTACTCGGTGGAACAGGACATGACGGGGACACCATTCAGCAGCATTCCAGATACGTGGTGGTGGGCAGCAGTGAGCATCTCCACAGTGGGCTACGGTGATGAGATCCCAGTTTCATTTTCTGGTTGTGTTGTGGCATTTGGCTGCATTTCATTCGGGATTATTTTAAATGGAATGCCGATTTCTAttctctttaataaattttcaGATTATTATGCCAAACTCAAAGCACAGGAATATACTAACACTAAAGTCCAGCGCAGTCTGCACCTCAGAAAACGCTTACAACGAAAGTTTGAGAATTGTTTTAATTCTCAAGACAATGAAACAGACAATGAATTTCAGCATCAGAGATGAAACTTTACACATTGGTTTATTACAGTCTGATCAAATATGTG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383831 lncRNA downstream 3194 21222176 ~ 21222600 (-) True G324001
TU383817 lncRNA downstream 27463 21198090 ~ 21198331 (-) True G323989
XR_004580331.1 lncRNA downstream 79088 21139370 ~ 21146706 (-) True LOC117599984
XR_004580281.1 lncRNA downstream 235486 20981438 ~ 20990308 (-) True LOC117599936
TU383701 lncRNA downstream 279726 20933229 ~ 20946068 (-) False G323907
XM_026911904.2 mRNA downstream 1214 21223816 ~ 21224580 (-) False insl3
XM_026911903.2 mRNA downstream 1214 21223816 ~ 21224580 (-) True insl3
XM_034314870.1 mRNA downstream 6068 21217823 ~ 21219726 (-) True LOC117599990
XM_026911902.2 mRNA downstream 8099 21199196 ~ 21217695 (-) True LOC113525405
XM_034314595.1 mRNA downstream 34624 21183325 ~ 21191170 (-) True LOC117599949
XM_026911905.2 mRNA upstream 2160 21230190 ~ 21234613 (-) True angptl4
TU383786 other downstream 88100 21135134 ~ 21137694 (-) False si:ch1073-429i10.3
TU383785 other downstream 128085 21052207 ~ 21097709 (-) True G323963
TU383705 other downstream 249457 20961573 ~ 20976337 (-) False LOC113524960
TU383704 other downstream 256625 20961426 ~ 20969169 (-) False LOC113524960
TU383689 other downstream 395690 20828026 ~ 20830104 (-) True G323902

Expression Profile