RNA id: XM_026911902.2


Basic Information

Item Value
RNA id XM_026911902.2
length 2897
RNA type mRNA
GC content 0.48
exon number 26
gene id LOC113525405
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 21199196 ~ 21217695 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgggtttcgtgcgagtgtgtgagttCCTGCTGTCTCAGCCTGGAGCTCTCATGGTCATTAATTCAGCCAATCAGGAAGGAGACACTCCACTTCAGCTTGCCCAGAGGACCAATCAGCAGACACTCGTGCACCTGCTCACACATCCTCCAAACCCACTCACCACTCCTCTTGCTGGAGTGTCTCACATTCAAATCGACTCATCCCACCTTTTGCGCTTTATTCATGCCTCTGGAGTGATGTCCCtgtcggtgtgtgtgtcagaatgtGTGTCCTCTACTCAGTTACACTCAGCAATCTTACTGCTCAGAGAATGTGTCATGGATTCTGCCCTCATACACAAGattACATCATTATGTGGACGTATACAGTGCAGATCAGATCAGGAGTCTTTATCATCATCTTCagAGGATCTTCAGTCAGGAGAATCTcctcacaccatcatcacacacacaGATTTAATCAGCAGCTGCAGTGACCCTGAAGATGAAGAACTTTTACTGTCCATCAGCTCAGGTGGATCAGACACTGAGGCAAACACTGCAGCTGTGTTTAACCATGAACCCACAGATATGCAAAAgcaacactacactgagactgagagcAGAACATGTacactgacctgcacagAGTATCTTGAAGAAACAGCTCTCATCAGTGAGAGtaagtTGACTGTTAATGAAGGAGCAGTTGTGGAGGAGACAGGCGAATGGCCAGTGCGGACATCAACTCAAACTAATGTCACACACAAGGTCCCGCTGAAGGCATCTACACTCTCCATGTTGCTTTGTTCATCAAGCCACAGCTCTCCATCCCTGTTCAGCAGCAGCCACAAGAACTCCACctcacacaggaggaGGAGTAACAGTGAGGGGTGTGGTCACGAGATGACAATGAGGAAATCAtggtctctgattggtcagtgtgtCAGTAGTTCCTCAACTCCATGTGAAATCACAGttCCTGCACCGTTGGATTATTCCGCCGAGTCGTGGAGTGCTGTTGTCGGGTTtgaattctcacacacacttgaccGAAAAACTGTGAAAAGACAGGAAGTGATCTATGAGCTCATGCAGACAGAGTTTCATCACGTTCAGACTCTCACGGTGATGAGTGACGTTTTGAGGCGGGGCTTAGTGGAGGAGGTGCAGCTGGAACaggatgtgattggtcagattttcCCATGTTTGGATGACCTCATAACTCTGCACAGGAACTTCTTGACCAAGATGGAGAACAGACAACACACTTCAACACACCTGAGCAACAACAAGAACTTCATCATCCACAGGATCGGAGACATACTGCTACAGCAgttcTCATGTACATCTGCAGGTCACATGACGGCTCTGTATGGAGATTTCTGCAGTAAACAATCTGAAGCACTGAAAATTTATAAACAACTTCAACAGAGCAACAGGAAACTACAGCTGTTCCTCAGACAGCAGAGCAGTAATTCAGTCATTAAACGCAGAGAAATCCCAGAATTCCTGCTGCTGGTTACACAGAGAATCACAAAATACCCCGTCCTGCTGGAGAGACTACTGCAGCACACCGATGGGGACAGAATCGAGCATGATGATGTCATGGCGGCGCTGGAGGGGGTGCGGTGTGTGTTATCAGGTGTTGAGCTGCATGTGGAGAAAATCCAGCGTGCACGGGAACTTGATGATATCATCAACCGTTTGGATAACAAGAGCTTCACTCGCCTGAAGAGTGGAGAGATCTACagcaaacacactctcacacacacaccacacacactcacacactctgctACACTCACTTGCAGGACTACATCAGGCAGactgagagATGTTTTCGCACTTCTTCTCTCTGATGTTCTGGTTTTTCTTCAGGAGAAAGAGCAGAAGTTCACATTCGCTGCtttggAGCAGAAACCTGCTGTTGTTCCTCTGCGTGCTTTGATCCTGAGAGAAATTGCCAATCAGGATCGAGGACTGTTTCTGATCAGTAGTGACGCAGCAGAGCCAGAAATGTATGAGATCCACACACAAAATcgtgaagagagagacaggtggatcACACTGCTGCAACGCAccacagacagTTTGCCTGATAATGAACTGAAGAATAATGAAGAGATGAAATGCAAgaacataaacacactgcaagaggctcTGTTTTCTCTAGATGTGCAGGTGTATGCAGTTCTGGAGGAGAAACTCAGGGTATGTGTTGGGAATTTGACTCACCAGCATCTgctcatacaaacacacacacacacaccacgtgGAGCGACACTACTGACTGCTGCACAGGCAgaggTAGTAAatctgctggtgtgtgtgatgtcactgCTCTTTGGTTATCATGATTTCATTCAgcatgCTGAGGAACTGAGCAAGAAACGTCTAAAACGGAAGGAACCTCTTATACTAAAGGTGGTGGACTGTGTGCAGAGTTTAACTCAGATCTTGTACAGTCTCCAGGCTGCAGTTATGATGCAAGACAGTGTGTACGAGGTTCAGAAACTCCTGATCCTGGAGGAAGAAACTCTGCAGCCTGACACTGATGGGAAGGTTGATGACGGGAGTATGCGCAATTCAAATGTGGAGCAGAGAGACAGCGATCACTCTGAGGAGATGGACAggatgaaaagagagaaggaagaacTGGAGGTGGAGCAACAGCAGTGGGTGGAGCGAGCTCAGGCTCTGAGAGAGGAGGAGGCAGGAGTGGAACGAGAAAGAAGGCGGATCCAGCAAGAGGAGAGACGAttaagaaaggagagagagaggatggagaggaAACTCCGCCTCTCACAGCAAAACTCCACCAATCGCCAGCGCAGCCTGTCAGTCATCCCACTGGACAAATAAGTGTGATGAAAAATGTAGtgagggtgtagtgtgtgtatgtagtgaaagtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383817 lncRNA downstream 865 21198090 ~ 21198331 (-) True G323989
XR_004580331.1 lncRNA downstream 52490 21139370 ~ 21146706 (-) True LOC117599984
XR_004580281.1 lncRNA downstream 208888 20981438 ~ 20990308 (-) True LOC117599936
TU383698 lncRNA downstream 253128 20932834 ~ 20946068 (-) True G323907
TU383831 lncRNA upstream 4481 21222176 ~ 21222600 (-) True G324001
XM_034314595.1 mRNA downstream 8026 21183325 ~ 21191170 (-) True LOC117599949
XM_026911894.2 mRNA downstream 26865 21167393 ~ 21172331 (-) False gpr55a
XM_026911893.2 mRNA downstream 27798 21167393 ~ 21171398 (-) True gpr55a
XM_034314905.1 mRNA downstream 34407 21147881 ~ 21164789 (-) False ngef
XM_034314906.1 mRNA downstream 34568 21147881 ~ 21164628 (-) False ngef
XM_034314870.1 mRNA upstream 128 21217823 ~ 21219726 (-) True LOC117599990
XM_026911904.2 mRNA upstream 6121 21223816 ~ 21224580 (-) False insl3
XM_026911903.2 mRNA upstream 6121 21223816 ~ 21224580 (-) True insl3
XM_026911896.2 mRNA upstream 8099 21225794 ~ 21228030 (-) True si:rp71-39b20.4
XM_026911905.2 mRNA upstream 12495 21230190 ~ 21234613 (-) True angptl4
TU383786 other downstream 61502 21135134 ~ 21137694 (-) False si:ch1073-429i10.3
TU383785 other downstream 101487 21052207 ~ 21097709 (-) True G323963
TU383705 other downstream 222859 20961573 ~ 20976337 (-) False LOC113524960
TU383704 other downstream 230027 20961426 ~ 20969169 (-) False LOC113524960
TU383689 other downstream 369092 20828026 ~ 20830104 (-) True G323902

Expression Profile