RNA id: XM_026924981.2


Basic Information

Item Value
RNA id XM_026924981.2
length 4133
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC113533117
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12968314 ~ 12982849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGACATGcatgaagtgggcgtggctaacgCATCGCCCCGCCCCTATAGATAGTGGTCCCATTCCGCCTTCATATTTACTTCCCTGGATCAAACGGTTGTATTGCTAGGTGTTTTATTGCTCGTTGCAAGCCCGTCGCATTTTAGAAACAGTGTTGTGctctgtatttttgtgaatACATGTCCATACGTGTCGTAAAGCTAACCAGGCTTTGCAGAATCGTCGCATGTCTGTCGAGCCGACAGCAGGGATGCTTGCGCTTGTGCGGGGATTTATCATGAAGGACTGCCGGTGCTGGGATGCGGCCAGCCGCAAAAACTACGAGGAGCTGTTTGAAAAACTAGACACCAATAAAGATGGGAAAGTTGACGTGGCAGAGCTTCGGACAGGTCTCATAGCGATGGGGATAGCCCTGCGTACTGGAGAAGCCCagAAAATACTGGCCACCGGTGACAAGAACAGGGACGGTGTGCTTGACTTCACTGAGTTTGCCAGATACTTGAAAGAGCATGAGAAGAAACTGTGGCTCACGTTCAAGAGCTTGGACAAGAATAATGATGGTCGACTGGATGCCTGTGAGATCAAACAGTCTCTATCTGAACTGGGAATGGACATATCCACAGAAGCAGCACTGAAAATCCTACAGAGTATTGACAATGACGGCACAATGACTGTGGACTGGAACGAGTGGAGGGAGCACTTCATGTTCAAGCCTACTACTGACCTGGAAGAAATTATTAGATACTGGAAACATTCCTCGCAGCTGGACATTGGTGATAATCTCGTCATTCCTGATGAGTTCACCAACGAGGAGAAGATCTCTGGTGTTTGGTGGAGACAGCTAGTTGCCGGGGCAACAGCAGGGGCAGTTTCTCGAACAGGCACTGCACCTTTGGATAGAATAAAGGTTTTTATGCAGGTTCATGCATCCAGGTCAAATCAAATCAGTCTGGTGGGGGGGTTCAAAAGGATGCTTAACGAAGGAGGAGTGACATCTCTGTGGAGGGGAAATGGCCTCAACGTGTTAAAAATCGCCCCCGAGACCGCTATCAAATTCATGGCCTATGAACAGTATAAGAAGTATTTGTCATCCGAGGGTGATAAAATAGAGACAGCACAGAGATTCATGGCTGGCTCTTTAGCTGGTGCCACAGCACAAACTTCCATTTACCCTATGGAGgTAGTGAAGACTAGACTGACCCTGAGGAATACCGGAGAGTATTCCGGGATGATCGACTGTGCCAGGTCAATTCTGAAAAGAGAGGGCATTAAGGCTTTCTATAAAGGTTATGTTCCCAACATGCTGGGCATTATCCCTTACGCTGGTATCGACCTTGCTGTTTATGAGAGCCTAAAGAATGCCTGGCTTGCACACTATGCCAGAGACACAGCCAACCCTGGGGTTCTGGTCCTCCTGGGCTGTGGTACTGTCTCCAGCACATGTGGGCAGCTGGCCAGCTACCCTCTGGCCCTGGTACGCACTCGTATGCAGGCACAAGCATCGCTCGATAACTCGGAGCAGCCATCTATGCGGTCACTGATTAAGAGCATTGTGGCGAAAGAAGGCTTTTTCGGTCTCTATCGGGGGATCCTACCCAACTTCATGAAGGTCATTCCAGCTGTCAGCATCAGCTATGTAGTGTACGAGTACACAAAATCATCGCTGGGTATCTCAAAGTGAATGTCACTGGGCCATGTTCCCAAATCGCAGCATAGAAGTGCCGTTCCTGGATCCGTTTATCTTTTTAAACAcaggaaaaaatgtattaatcatGTGGATCAGCCACAATCTGATCCCAGATCAGTATTCATGTGTTAAAAAGCTTCATGAGTCCAGACTGTTTTTGGCGTTTTACAGCACTTTTCTTCATGAATGTCCCATCTGCACTACACACCACTGACTTTTAAAACCCATAGAAGTGCATCAGTAGTGTCTTACAAACAAGGATGAAGCAGTGGGATGGACTCATACCCTGTAGATTTAACTACATGGTTTAGTTATATAgttatttgtcatttgtttatttaaatttgtagcAATAGGAAAGGCCGGTCACTGCACTGAATAATATGGCAAAGAAGATTTGCCTTATGGCTTGCATGCTATGACGTCTttattgtgtgtctgtgcatgtgaaCATCTGATGTCTGTGAATGttggttttatttctattacattatttttatatttttatattttattagaaatttATACATTGTAGACCCCAAAGTACCATTGCATAACCCACCAGATAACACCAATGCATCACAGAGAAAGGTACTAAAATGGGTCGTTTATccaaattataaataatgaaaaatctgTTCCAAAATCTGTGCCCTTATTGACTTACCCTCCCAAATTCCAAGTGGGAGGAATTTCCGTCGCCATCATAACGGCTCCTGCTTGATGTTATCAGTTATTGTGAAAACTGTTGGCGGCTTTAAGGGCTGAGGGATTGAGTGAACCAGAATTTGCCCAGAAGGCATTGCAATCTGATGTAATTTCCTTTTCAAAACAGCATAAATTGTGGATGAAgctgtttataaatgtaaacagaaacaataaaattagaatattaaaaaaaagtagatgaATAATTCTGTATGTAGTTCAAAACAAATGGACTATTGAAATCACCAAAGAAATTGCTTTCATTCTTttatgaaattgtttttttttctttcttttcttaattatatttttctagTACTAAGCAGTTAGTACACTAGATTTTTAGCAAGGCAAAATCCAAGGATATTGCTTTGACATACCATatgaaaaaaacactatttgttATAAGGGGAAGTCAGTGGATGGTTGGAACACATTGCTACTGTGAGTGGTTAGTAAAATCACATACTATGACCAAATACGTAAATATGTTTATTGTGTGCTAATCATTCTTTGCTAATCAAGTTTGTTTGCATATGCAAGGTTTGTTAAGTGAAACTAACCCTGTTTGCATAAGGAGAATGACAAAAAATGCATCTGATATGAACAATGCTGCACAATTGCATCCAGTGCTATCTGCcatatgttagctagctaacataaccAAAATATTTGCTGtactgtttgtcattttaatatACAGTTCATTAACAAGTTTTGAGACCAAGACAGAAGGCAGGTTTTTCTATTATACTACATTTGTTCGTATTTCTCAGTGATGAATGTCTAGATAATGGGCCTTGTTTACTGATCTTTTCGTAAATcaataaatggaaatgttttcgTAGGCCAAACCAAACCAACGTttcacaaactcaggagctttcgtaggatatgaacatttttccaaactaacAGGATTTAATAactaccacatttcttgtgtaaatgctcctgctaacgatttatgaataaattcttTCATACCCAgtctgataaatgaggccccttGTCTATACAGTTTCTGGATGTAAACTCCAAAATGATCTAGAATTGTATTCAAGGAAGTGACTTGAGACAGTTTTAGTTGTTAGCCATTATAGCACAAGTCTAATCTCAAGActaatcttttaatttttttcatttttagcaaCATGCTAACTAAATGGCATGCTAACACTTATGTGAATAATGACATAGGCTGAAGGGAAAATCTAGTAATTCAGTCTTTATCATTGTAGTATCACTGCGAATACACAGTTTTAGACTGTTAAAagtatgtttatgtttgtgttggCTTTGTATTTGAATGGATGCTAATGCTTGAATAAAGACTATGTTCATTtatcatgtaaatataaaagagGCTGCTGTTTTAGGGTAAATGCCTTCCTGCatggacatacagtatactacaAAATGTCTGGAAGCCAATATTTCTTATTCTGTGTAGTGCATTGGGATTGCACCagtgttgtcatggtaacagaGCAACCTTGACTGGCCTGTAGACCTCCTAAAAGCTTGTGATATCGACAGAACAAGTTTGTTTTCGTCAGCACTTCTTCTTGTCGTCAAGCCCAAGAACAAAATGTTACTTGTTTTGCGTCCATACCACCCtccacccattttttttttttttttaataaatcacttTATATTCCTTTTTTCTGTGATGTCATTTTTGCTAACACAGCATAAGAGTCCTTGAAAGGGCGAGTACATGTTATAGGCTCCAT

Function

GO: NA

KEGG:

id description
K14684 SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378034 lncRNA upstream 162582 12805522 ~ 12805732 (+) True G319198
TU378003 lncRNA upstream 165295 12765055 ~ 12803019 (+) True G319170
TU377999 lncRNA upstream 176975 12775439 ~ 12791339 (+) False G319170
TU378001 lncRNA upstream 189081 12773098 ~ 12779233 (+) False G319170
XR_004580307.1 lncRNA upstream 204587 12761836 ~ 12763727 (+) True LOC117599962
TU378126 lncRNA downstream 39478 13022327 ~ 13023135 (+) True G319276
TU378137 lncRNA downstream 54173 13037022 ~ 13037736 (+) True G319286
TU378165 lncRNA downstream 104414 13087263 ~ 13087475 (+) True G319314
TU378169 lncRNA downstream 119498 13102347 ~ 13102608 (+) True G319318
TU378181 lncRNA downstream 157425 13140274 ~ 13140482 (+) True G319330
XM_034314599.1 mRNA upstream 171490 12782537 ~ 12796824 (+) False LOC113533470
XM_034314598.1 mRNA upstream 171490 12792135 ~ 12796824 (+) True LOC113533470
XM_034297705.1 mRNA upstream 539783 12416510 ~ 12428531 (+) True LOC113533522
XM_026925818.2 mRNA upstream 1345469 11596699 ~ 11622845 (+) False pax3a
XM_026925819.2 mRNA upstream 1345469 11596700 ~ 11622845 (+) True pax3a
XM_026925860.2 mRNA downstream 21945 13004794 ~ 13014554 (+) True abhd17aa
XM_026925861.2 mRNA downstream 22930 13005779 ~ 13014554 (+) False abhd17aa
XM_034297752.1 mRNA downstream 38293 13021142 ~ 13154527 (+) True sema6ba
XM_026925054.2 mRNA downstream 38293 13021142 ~ 13154526 (+) False sema6ba
XM_034297753.1 mRNA downstream 81646 13064495 ~ 13154527 (+) False sema6ba
TU378000 other upstream 195447 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 1395417 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 1419126 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 1420135 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 1498815 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 854584 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 854584 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 1844416 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2886167 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2947103 15929952 ~ 15936768 (+) False gpx4b

Expression Profile