Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026925002.2 |
| length | 587 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 4 |
| gene id | ccl20a.4 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 10532984 ~ 10534451 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU376543 | lncRNA | upstream | 8210 | 10524486 ~ 10524774 (+) | True | G317946 |
| XR_004580283.1 | lncRNA | upstream | 12776 | 10517588 ~ 10520208 (+) | True | LOC117599937 |
| TU376532 | lncRNA | upstream | 22791 | 10504163 ~ 10510193 (+) | True | G317939 |
| TU376333 | lncRNA | upstream | 345858 | 10186306 ~ 10187126 (+) | True | G317761 |
| TU376326 | lncRNA | upstream | 375454 | 10157277 ~ 10157530 (+) | True | G317754 |
| TU376562 | lncRNA | downstream | 40363 | 10574814 ~ 10575152 (+) | True | G317963 |
| TU376563 | lncRNA | downstream | 40862 | 10575313 ~ 10575547 (+) | True | G317964 |
| TU376566 | lncRNA | downstream | 47642 | 10582093 ~ 10582292 (+) | True | G317967 |
| TU376619 | lncRNA | downstream | 113470 | 10647921 ~ 10648193 (+) | True | G318016 |
| TU376650 | lncRNA | downstream | 172363 | 10706814 ~ 10707508 (+) | True | G318031 |
| XM_026925708.2 | mRNA | upstream | 185596 | 10291830 ~ 10347388 (+) | True | kirrel1b |
| XM_026925709.2 | mRNA | upstream | 185596 | 10291830 ~ 10347388 (+) | False | kirrel1b |
| XM_026925460.2 | mRNA | upstream | 244760 | 10196108 ~ 10288224 (+) | True | cadm3 |
| XM_026925461.2 | mRNA | upstream | 244760 | 10196108 ~ 10288224 (+) | False | cadm3 |
| XM_026925462.2 | mRNA | upstream | 244760 | 10196109 ~ 10288224 (+) | False | cadm3 |
| XM_026925350.2 | mRNA | downstream | 1980 | 10536431 ~ 10562616 (+) | False | capn10 |
| XM_034314752.1 | mRNA | downstream | 1980 | 10536431 ~ 10562615 (+) | True | capn10 |
| XM_026925349.2 | mRNA | downstream | 1980 | 10536431 ~ 10562612 (+) | False | capn10 |
| XM_026925352.2 | mRNA | downstream | 1980 | 10536431 ~ 10554413 (+) | False | capn10 |
| XM_026925353.2 | mRNA | downstream | 29370 | 10563821 ~ 10568907 (+) | True | eif4e2 |
| trnar-ucu_12 | other | upstream | 345160 | 10187751 ~ 10187824 (+) | True | trnar-ucu_12 |
| TU376185 | other | upstream | 555083 | 9959329 ~ 9977901 (+) | False | pip4p1a |
| TU375892 | other | upstream | 1117820 | 9412323 ~ 9415164 (+) | True | G317390 |
| TU375607 | other | upstream | 1720164 | 8811957 ~ 8812820 (+) | False | LOC117599964 |
| TU375135 | other | upstream | 2263786 | 8268709 ~ 8269198 (+) | True | G316745 |
| XR_004580322.1 | other | downstream | 1980 | 10536431 ~ 10562994 (+) | False | capn10 |
| XR_004580323.1 | other | downstream | 1980 | 10536431 ~ 10562614 (+) | False | capn10 |
| TU376560 | other | downstream | 29384 | 10563835 ~ 10568896 (+) | False | eif4e2 |
| XR_004580315.1 | other | downstream | 865433 | 11399884 ~ 11461068 (+) | False | per2 |
| TU377149 | other | downstream | 932848 | 11467299 ~ 11469499 (+) | True | G318439 |
