RNA id: XM_026925027.2


Basic Information

Item Value
RNA id XM_026925027.2
length 5035
RNA type mRNA
GC content 0.45
exon number 14
gene id si:dkeyp-68b7.12
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15281241 ~ 15292624 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTCAAAAGAGAGACCAAGAAGTCAGGAAGTCAGTAAGGGAAGTTTGGTGGTTTCTTGCGTCACAGATGCTCACTGGGGCTGATTCTTGTGCCGGTGGAGCGAAAAGGCCACAAGCATCCAGCTCCAGGGCAACAGACAATCATTCaataaaatcagatttgagtGAAATAGGAGATTTGCAGTGTAGTGATACAGAATGTAGCAGAAGCATAACTGTGTGATAAACCTAATTCAAATTTGTTAGAGGTCAGATACAAAAACAACGCTGCTTATTCTAACACACAATAATCATCATGAGTGGTTTAGGTGTCACGTATCACTAAGAGCACGAcagcaaacacatacacacacacgcacacacgtctGGATGTAAAAGTGGTGGTTGAAACGGTGCATAATGAAGAGAGGACGAAGAAAAGGTGGGAGTAAAGACAAGGTGTTTGGCTGTGACCTGGTGGAGCATTTAGCTGCAACCAGTCAAGACAttCCTCAGGTACTCCGTAGCTGCAGTATATTCATTGAAGAGCATGGCATTGTTGACGGGATCTACAGATTGTCTGGCGTGTCATCCAACACACAGAAACTAAGGTCAGAGTTTGACAGTGAGGGGTCTCCAGACCTGTATAAAGATGTCTATCTGCAGGACATTCACTGTGTCAGTTCCCTCTGTAAGGCATACTTCAGAGAGCTGCCCAACCCACTGCTCACATACCAACTGTATGACCACTTTGCTGAAGCTGTGGCTGTTCAGTTAGAGGATGAGAGACTGGTGAAGATCAAGGAAGTGCTAAAAGAGCTGCCACAGCCCCATTTTCGGACTCTGGAATATTTAATGAGACACTTGGTCCGGATGGCTACTTATTCTAATCAGACCAACATGCATGCCAGAAATCTTGCCATTGTGTGGGCTCCCAATctcctcagATCAAAGGATATTGAGGCATCTGGTTTTAACGGCACTGCGGCTTTCATGGAGGTGCGAGTCCAGTCCATTGTGGTGGAATTTATTCTGACTCATGTGACTCAGCTGTTTCCTGAATCAGATCCTGAACCAGGACCAACTTCAGAACGCAGGAAGTCTCTCCCTTCGCCATCCATACTGTCCAGCCAGGAAGACCACTTCTTTAAGGCCTTGCCTTTTCCATTTCCAGGCAACATGAGTCCTGGAGACGGTCCTCCACAGATGAGACCTTACCATGCCATCATCGATGGCACAGACAAGAGGAAGGGATCACTGAAAGGCAGAAAATGGAAATCTATCTTCAATTTAGGTGGGAGACTTCATGATCCTCGCAAAAAGAAGTATGCACCCAAGGagaaagagaagaccACACTAAGGCCTGCTAAAAGTATGGATTCTTTGAGCTCAGGACCTTACACAAAGGAAGattCCAGGCACGGTTCTCCACACCTATCTCCATTAGCCATTCCCTCTGGAACTGCAGAAGGTGGGCCTGGTGGGGGTGTGGCTAGTGGATATGCGGTGACATACAGGCGCACGGGTGGGGCTAGTGTGAGTATGGTGAGCGGAGGGGGCGGGGCTCAGGGCACTTACAGGAGCCTGGATCCAGGGGCCGGGGCCAACACAGACAAATCACAGACTCCATCTCTAGCGACGCCCAGCAGGGCAGAGCGCCGTGCAGGAATGCACATTTCTGGGCCTTTTTCAGTGACCGTTCCTCTTCATATAACCTCGGGACTGGCGCTGGGGGTATTACAGGGAGGAAGATCTGAGGAGGAAGAACCTAGGCAGGGGCAGAATGAGGAGGAACAGCCGAAGAAAGACAAGCAGGAGAGTgctgaagagaaagaaacagaattgGATGAAGAGAAAGTTCAAACAGATAGGAAGACAGGAAGTCTGAATGACAACAAGGAGAAGAAGGTGGATAACATGAGTAAAGGAGATGGGGAGACAGAAGTTAAAATAGAAGACAGAGAACCAGAGGATGCCAAGCCTGAGGAGAAAGAAGAGTTTGGAGATAAAGACAAAGAGGATCAATGTTTGAGTGAGGAAGAAGAGTCAAATGAGAGACAACATGCCACAGATAGACCTTCACTCAGTGAAGACATGGATGGAGAAGACTACATGGTCATGAAAGGAGGAGTGGTACAGTGTCCTGAAGGAGATGATAGTCAAAATGAGAGCCTCAGTCTCTCACCTCAGGAAGAAGAGTACCCTGACCATGACCTTCCTCTGGATTTCCAGGACACTTTTGGATTCTTGGATCTGATGGATATGCCCACCTCAAATCAGTTAAATGAGTTCTCAGTGGAGCCCCCTGCTTTTGAACtggaagaggatgaagaggaagatAAGCAGAGTCCATCACAGAGCCACTTTCATACGGAAACCTCCCCATTGAACTTGCTGGCTCACACAAGCAGGGCACTGTCAAACAAATCACACAGCCTTCCTTATAAATCCTATCCTTTCCAGCCAGATCTATCCTTTTCTTCTGATGAAGACTGTTACTCAGGGCCTAGCGAAGGTGAAGATAGCAGTGATTTGGAGAAGGGTGAATATGAGGACATGTTCACTAAAAGTCTACCTTCTGCTACCCATTTGAACTGGGTGAACCCCCGGATCATCATATTAGACTCTGACAGCAATGTAGATTCTCACAGCAAGGACCAGCCCGAGTGCTTAAATCAGACTCACACCGTACCCGAGGACATTCAAGATTCACCCCCTGCCAGTCAATCAACTGTTACAGAAATGACAGCTGCTGATCAGTGCTTAAATGAAAGGGGTCTCAGCCTACTTCCTTTAGAGACAGAGCATTCAAATGTGGAGAAGAAGAATGAAGACAGAAGCACAGAGAATGATGGAGAAGATAAAAGTGGCTCGGAAGAGCTTAGGAATGTAAATGAACCAATtcaagaggaaaataaaaagatggAAAGTACTGACAGCAAAGACGAAACACTCACCTGCAGTCACAAAGACAGTCATTCTGCAGAAGATGAAAACCAAGAGGACACTTATTTTGGTCCAGACTCACCTTCATCCACAGTGGAACCAAGCAACAGTGGAGCCGTTGAGACATCCTGCACAACTGATCCTGTTATCAGTGAGGAACCTGCAAGCTCTGATGATCAACAGGAGAGTAATGATAGTTATGTAGACGTTGCAGAAAGTGAGACTATAATAGACACAACAAGCCCTGAACTACAGACAACTCAAAATAAAACTGAGACTGACAAACTCTCAGTGAAAGCAGAAATAATTATGCATACCAACATGCAAGAACAGACAGATGGGAATGATCTGGAAGGGGTGGTGCTGAGTGAGGAAAGGGAAGTTGGTGAGAAGGGAGAGGAAGGGAAAGATGCAAgggagacagaagaaaagacGATTATAAAGGGAGAGAGTACAGAAAGTGAGCACACTGAGGGAGAGAAGAATGATGAGGGTCTTACAAATCAGGTAGATGTGGATAAGATGGCAAAAGGAAGTGACATGGTTCCACAAGAGGAGCAGACATATTTAGAGAATAAGAGGGAAGATGCAGATGTTGAAAAGCAAAAGGAAGGCAGTGACAGAGGGGAAGAGAATGATCAGGAAATGGAGGAGGATGACGTAGAGGAGGAAATTGAGCCTCAGAAAGACTATCATTTAGAAGGCATTGCAGAACTAAAAGAAGGAAGTGTTCCTGAAGAGCTGAGTGAAGACGATGACAGGCATTCGGAGGATGGCGAGGAACGACAGAGCGAAAATGAGAAGGAGAGCATGAGAGAGGAGAAACATGAAGATCCTTCTACATCAGAGAGGAAGAAACCACTGAGACCTCCAAGAATGAAAGAtagagatggaggaagaggtgCAGGGCTTGGGCTAGGCGTGGGCAGGACAGTGATTATATCCAAACACAAAATGTACCAAGTGAAAGCTGTTCCTGTTGTACCGCCTAAACCACAGCATTCCAAAATCACAGCTTTCAGACAACAGTTTCAACAGAGAGACCCCGAGAGACAACAGAAACCCATACAGCCAACATGTACCGAGAGACAACATACAGACAGAGGGCTTCTGAAGAAAGAAAccgaaaatgaagaaaacaggCATGCAGAAATAGAGGACGTAGCACAAAACCATGATAACCACGACGCAGAGCCAGAAAAAGGGACAGGGACAGACAAGGAGAGGCCGGAGGAAGACAAGGCATGTCAGGCaaaaaaacagctgaaggaCACAAAGTCATGCCATAGTTTGGAAGGGGAGATAGAACAGGATAGAGAAGAACAGAAGCAAAGGAGAGGGACCTGGGATGGAGGGAGTTTGAGAAAGGATGGAACGAAGGAGTTAGACAAGGAGGCCAAACGAACCAGCGGCATTAGCATGTGTTTTGATGAAGCTGTCGCAAGGGCAACAGGtaaaagatacagagagaaggAATCTAATGAAAAAGACAGAGTAGTTGATTTACAATGGGAAAGGAGTGAGCAGAAAGAGGGACTgaaccagagaaagaaagaggaagaagaagaagagaaaactgACTGACATAAAAAAGTGTAGGAATATGAATGTGTAAAATAGGATGTTTAtagcttttttccccacaaattggacaaaaaaaaaaaaagaaaaagaaaaaaaaaggtgaacaaacattttcattcttAGTGGCTTTGAAATTTGCAGTTTAGTTGAAATTTTAGCATATCCCTTTCTTTCTAATCTGTAATTACACATTGGCTGTGTGCATGTTGTTGGCATAAATAAATACTCATAAATGTTGCCCATAatctacagtatgtgtgtatagtcTATTGTATATGCGTGGTTAAAAAGACTACTCCGTCAAGGGAGTGACTGagaaccacaaaaaaaaaaatcactctgtaaaaaaaaattattgggaAATATTGGTCATgtacacaaaatgaaaacaaaaatgtatttgtaattgTGGGGATTTCATGCGTTACATGCTTAAATTCGTATACAGACTTGTTTACATAATATATGATGCCTCAGTGTTAGACATTTACCATCTAATAAAATCACAATGTCTTGTAAAAGTGAAA

Function

GO: NA

KEGG:

id description
K20645 ARHGAP30; Rho GTPase-activating protein 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379931 lncRNA upstream 27687 15249515 ~ 15253554 (+) False fcer1gl
TU379908 lncRNA upstream 55169 15223871 ~ 15226072 (+) True G320797
TU379693 lncRNA upstream 184909 15091921 ~ 15096332 (+) False LOC113533365
TU379658 lncRNA upstream 214876 15063757 ~ 15066365 (+) False LOC113533366
TU379425 lncRNA upstream 609572 14668721 ~ 14671669 (+) False G320386
TU379971 lncRNA downstream 9694 15302318 ~ 15302730 (+) False si:dkeyp-68b7.7
TU379974 lncRNA downstream 17980 15310604 ~ 15310809 (+) True G320843
TU379980 lncRNA downstream 47942 15340566 ~ 15341207 (+) True G320848
TU380071 lncRNA downstream 169230 15461854 ~ 15463232 (+) True G320935
TU380086 lncRNA downstream 251273 15543897 ~ 15546092 (+) True G320949
XM_026925029.2 mRNA upstream 12622 15255190 ~ 15268619 (+) True nectin4b
XM_034314546.1 mRNA upstream 13425 15255190 ~ 15267816 (+) False nectin4b
XM_026925042.2 mRNA upstream 27686 15249515 ~ 15253555 (+) True fcer1gl
XM_026925038.2 mRNA upstream 33238 15242031 ~ 15248003 (+) False si:dkey-10o6.2
XM_026925821.2 mRNA downstream 151 15292775 ~ 15297536 (+) True si:dkeyp-68b7.5
XM_026925820.2 mRNA downstream 6437 15299061 ~ 15303288 (+) True si:dkeyp-68b7.7
XM_026925777.2 mRNA downstream 21241 15313865 ~ 15320984 (+) True LOC113533560
XM_034297699.1 mRNA downstream 21496 15314120 ~ 15320984 (+) False LOC113533560
XM_026925661.2 mRNA downstream 28837 15321461 ~ 15326058 (+) True tpgs1
TU379509 other upstream 452470 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1385576 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1385576 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2508374 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 3708344 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 576392 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 637328 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 807909 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 819412 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 838711 16131335 ~ 16132364 (+) True G321257

Expression Profile